FastQCFastQC Report
Wed 6 Sept 2023
SRR12790130_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12790130_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32104697
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length49
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAA3178450.9900264749422802No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA2167170.6750320677376273No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA2115940.6590749010962477No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAA1510610.4705261663114279No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAGG1164530.36272885553163764No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAC984470.3066436042053286No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAA705050.21960961039439184No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAA619400.19293127108472632No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAACGG546000.17006857283219337No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA470210.1464614352223913No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAA412400.12845472424175192No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA342810.10677876822821283No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)