FastQCFastQC Report
Wed 6 Sept 2023
SRR12790153.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12790153.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31144095
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length49
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAATG786810.2526353711674717No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTTAAAAAAAAAAAAAAAAAAAA764900.24560032969331747No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAA714720.22948812607975927No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAATGG560330.17991532584266776No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCTTAAAAAAAAAAAAAAAAAAA532870.17109824510874375No Hit
TAATCAAACTCCGAATACCATTAAAAAAAAAAAAAAAAAAAATGGTAGG509040.1634467143771556No Hit
TAATCAAACTCCGAATACCATTAAAAAAAAAAAAAAAAAAAATGGTTGG483310.15518511615123187No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCAAAAAAAAAAAAAAAAAAAA466000.14962708018967963No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCAAAAAAAAAAAAAAAAAAAA445300.14298055538297066No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAAAA368020.11816686277125728No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAAAAAAT361160.11596419802855085No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAAAT358240.1150266206162035No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAATGG354170.11371979182570564No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAAAAAAAAAAAAAAA341020.10949748258859343No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAAAG338520.10869476220130975No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAAAAAAA332910.10689345765224514No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAAGG324990.10435043946533042No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAAAAAAAAAAAAAA324270.10411925599379272No Hit
TAATCAAACTCCGAATACCATTAAAAAAAAAAAAAAAAAAAATCGTATG321770.10331653560650904No Hit
TAATCAAACTCCGAATACCATTAAAAAAAAAAAAAAAAAAATTGGTTGG318270.10219272706431187No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAAA317260.10186842802784926No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)