FastQCFastQC Report
Wed 6 Sept 2023
SRR12790154.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12790154.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85383885
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length49
%GC31

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAATGATTTCATGTTTCCAAGAAAAGCTTAAAAAAAAAAAAAAAAAAA3449970.40405399684027027No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCTAAAAAAAAAAAAAAAAAAAA2929490.34309635828821794No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAAA2880750.3373880211705054No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTTAAAAAAAAAAAAAAAAAAAA2230400.261220252510178No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA2225730.26067331089467294No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAA1896010.22205712471387312No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAA1882950.22052756208036212No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCTCAAAAAAAAAAAAAAAAAAA1712710.20058937351000133No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCCTAAAAAAAAAAAAAAAAAAA1686720.19754547359844307No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAA1608460.18837980960927228No Hit
GAATGATTTCATGTTTCCAAGAAAAGCTTAAAAAAAAAAAAAAAAAAAA1534550.17972360943754198No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCAAAAAAAAAAAAAAAAAAA1437220.16832450291995965No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAAAAAAAAAAAAAAA1319260.15450924960840093No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCAAAAAAAAAAAAAAAAAAAAT1235800.14473457140068058No Hit
AAGCATTAAAGTGAAGCCCGGGTGAACGGCGGAAAAAAAAAAAAAAAAA1183960.13866316811421733No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCAAAAAAAAAAAAAAAAAAAA1155460.13532530172408996No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCAAAAAAAAAAAAAAAAAAAAA1121260.13131986205593713No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCAAAAAAAAAAAAAAAAAAAA1033480.12103923357434485No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTCAAAAAAAAAAAAAAAAAAAA1000940.11722820998365208No Hit
TGAATGATTTCATGTTTCCAAGAAAAGCTAAAAAAAAAAAAAAAAAAAT981980.11500765044832524No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAAT973790.1140484530541097No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAAAAAA893250.10461575975372871No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAAAAAAAAAAAAAA877530.10277466292380583No Hit
TGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAA865180.10132825415475064No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)