FastQCFastQC Report
Wed 6 Sept 2023
SRR12804262.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12804262.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99472746
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA4383910.44071468580951817No Hit
CGCCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA3938270.39591447490551834No Hit
CCCCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA3644030.366334513375151No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3610610.36297479914749714No Hit
GGCCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA3013010.30289804204259124No Hit
GCCCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA2780040.27947755659625606No Hit
GCGCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA2337360.23497491463641712No Hit
GGGCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA2138330.2149664190430613No Hit
CGGCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCA1769890.17792712789893222No Hit
CGCTTCCCAGCCGACAGAGTCGAGTTGTTTGGGAATGCAA1443520.14511713590373787No Hit
CCGAGCCTGAACTTGGACAAACTTGGTCATTTAAAAAAAA1390680.139805128130272No Hit
GGGAGCCTGAACTTGGACAAACTTGGTCATTTAAAAAAAA1189900.11962070495168597No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)