FastQCFastQC Report
Thu 29 Jun 2023
SRR1288391.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1288391.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17778707
Total Bases640 Mbp
Sequences flagged as poor quality0
Sequence length36
%GC25

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATATATTAGCATGGAATAATAGAATAAAAAAAAAA3068551.7259691607494292No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAAA2611321.4687907281446284No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAAA2575721.4487667747716413No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAAA2050821.153525956640154No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA1606760.9037552618421575No Hit
AATATATTAGCATGGAATAATAGAAAAAAAAAAAAA1281150.7206092096573727No Hit
CTCGAATATATTAGCATGGAATAATAGAATAAAAAA1154780.649529799889272No Hit
CTCGAATATATTAGCATGGAATAATAGAAAAAAAAA1072170.6030641035931353No Hit
ATATTAGCATGGAATAATAGAATAAAAAAAAAAAAA1049140.5901104056667338No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAAA1046360.5885467373977197No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAAA971120.5462264494262715No Hit
CTCGAATATATTAGCATGGAATAATAAAAAAAAAAA883630.4970158966003546No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAAA829510.4665749877086112No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAA825780.46447697236925045No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAAA710310.39952849214512615No Hit
TATTAGCATGGAATAATAGAATAAAAAAAAAAAAAA688830.3874466236492901No Hit
AATATATTAGCATGGAATAATAGAACAAAAAAAAAA613930.3453175756819661No Hit
TCGAATATATTAGCATGGAATAATAGAATAAAAAAA581040.32681791763596757No Hit
ATATATTAGCATGGAATAATAGAATAAAAAAAAAAA580150.3263173188016429No Hit
TTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAA491880.27666803890744135No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAAA452120.25430420783693664No Hit
TGCTCGAATATATTAGCATGGAATAATAAAAAAAAA436050.24526530528907417No Hit
AATATATTAGCATGGAATAATAAAAAAAAAAAAAAA419430.2359170439110111No Hit
TCACGTTCTAGCATTCAAGGTCCAAAAAAAAAAAAA417760.23497771800840184No Hit
TTTGCTCGAATATATTAGCATGGAAAAAAAAAAAAA383290.21558935641382693No Hit
CTCGAATATATTAGCATGGAATAAAAAAAAAAAAAA366900.20637046327384775No Hit
CGAATATATTAGCATGGAATAATAGAATAAAAAAAA359060.2019606937669877No Hit
GAATATATTAGCATGGAATAATAGAATAAAAAAAAA349940.19683096189166063No Hit
CCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA348550.19604912775715355No Hit
TCGAATATATTAGCATGGAATAATAGAAAAAAAAAA344520.19378237123768338No Hit
ATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAA338960.19065503469965503No Hit
TATATTAGCATGGAATAATAGAATAAAAAAAAAAAA320840.18046306742104473No Hit
ACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAA314180.17671701322261513No Hit
TCACGTTCTAGCATTCAAGGTCAAAAAAAAAAAAAA305340.17174477311539021No Hit
TGCTCGAATATATTAGCATGGAATAAAAAAAAAAAA299470.1684430706912488No Hit
CACGTTCTAGCATTCAAGGTCCAAAAAAAAAAAAAA279790.1573736492760694No Hit
ATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAA274980.15466816568831468No Hit
AATATATTAGCATGGAATAATAGAGTAAAAAAAAAA273380.15376821272773097No Hit
CTCGAATATATTAGCATGGAATAATAGAACAAAAAA268640.1511021020820018No Hit
TCGAATATATTAGCATGGAATAATAAAAAAAAAAAA262410.14759791024172905No Hit
CACGTTCTAGCATTCAAGGTCAAAAAAAAAAAAAAA222850.12534657329129728No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA204050.1147721260044389No Hit
ATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAAAA201140.11313533655737731No Hit
GCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA194530.10941740588896595No Hit
CGAATATATTAGCATGGAATAATAGAAAAAAAAAAA193820.10901805176270693No Hit
ATAATAACTTTTCGAATCGCATGGCCAAAAAAAAAA188200.10585696698865671No Hit
AATAACTTTTCGAATCGCATGGCCAAAAAAAAAAAA187130.10525512344626638No Hit
AGATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA184140.10357333635117559No Hit
ATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAA181080.1018521763140593No Hit
ATATTAGCATGGAATAATAGAACAAAAAAAAAAAAA180360.10144719748179662No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)