FastQCFastQC Report
Fri 29 Sept 2023
SRR12925978_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12925978_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9491442
Total Bases351.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN845750089.10658675467859No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC926100.9757210758913134No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC920190.969494414020546No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC257770.27158149415020394No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCG216160.22774200168952202No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG175110.18449251441456418No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC167190.17614815535932266No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG153530.16175624315040854No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG133990.14116927649139085No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC112400.11842246942034729No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC101040.10645379279565739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)