FastQCFastQC Report
Fri 29 Sept 2023
SRR12925988_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12925988_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10691483
Total Bases396.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN942909588.19258282503934No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC923630.8638932503563818No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC862190.8064269475057857No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCG452100.4228599531047283No Hit
CGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG399980.37411086937144267No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC318320.29773231646161713No Hit
GTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC212440.1987002177340599No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC167940.15707830242072124No Hit
GCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG160170.14981083540983042No Hit
TGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG143120.13386356223921414No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG133350.12472544734907216No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG129640.12125539553306122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)