FastQCFastQC Report
Wed 6 Sept 2023
SRR12998988_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12998988_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97929431
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length24-49
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTACGATGTACACATTTTTGAGTGCCTATATCGTACTGA2776330.2835031278799118No Hit
ACAGTACGATGTACACATTTTTGAGTGCCTATAATGTACTGA1591680.16253336548029163No Hit
ACAGTACGATGTACACATTTTTGAGTGCCTATATTGTACTGA1471520.15026330542041033No Hit
TTTGGAATGAACCGAGCATAAATCCTTCGGTAAATTCCTGA1278430.1305460459583391No Hit
TTTGGAATGAACCGAGCATAAATCCTTCGGTAATTTCCTGA1156500.11809524350243596No Hit
TTTGGAATGAACCGAGCATAAATCCTTCGGTATATTCCTGA995200.10162419916439625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)