FastQCFastQC Report
Sat 30 Sept 2023
SRR13119870_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13119870_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206805530
Total Bases15.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATCG74881163.6208490169484344No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA71226543.4441313053862728No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC62123953.003979148913474No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT53569842.5903485269470305No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA50791492.456002506315958No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA40188371.9432928123343702No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATAG36017701.7416217061507013No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCCTGTAGGCACCATCAATAGA35952781.7384825251046236No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA35310261.7074137234144562No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAGA27477431.3286603119365328No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGATCGG26922231.301813834475316No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA21366811.033183687109334No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCTGTAGGCACCATCAATAGAT17808840.8611394482536323No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT16898450.8171178981529168No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT15166180.733354664162027No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAG14557570.7039255671741467No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC13289460.6426066072797956No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATC13226620.639568003814985No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATA12926460.6250538851644828No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC11006500.532214975102455No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATAGATCGGA10868080.5255217304875744No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCA10531320.5092378332436275No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGATC9906170.4790089510662505No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCAC9699800.4690300109479665No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGAT9604050.4644000573872468No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGTAGGCACCATCAA9575390.46301421436844553No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT8985960.43451255873090044No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAA8964310.43346568150281084No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGGCACCATCA8046170.3890693832026639No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATC7769810.37570610418396455No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGGCACCATC7552040.36517592155296813No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGTAGGCACCATCA7391480.35741210595287276No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATCA7226660.3494422997296059No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG7021000.3394976913818504No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT6736890.32575966416371943No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA6701280.32403775663058915No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCAT6515940.3150757138844401No Hit
GCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC6488670.31375708376850464No Hit
AACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAATAGATC6448230.3118016234865673No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAATAGATC6295180.30440095098037273No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGA6201640.2998778610997491No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCAC5757960.27842388934183726No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATC5737450.27743213636501884No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCA5700010.27562173990221633No Hit
ATTGGCAATTTTTGACAGTCTCTACGGAGACTGCTGTAGGCACCATCAAT5696540.27545394941808377No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA5587290.2701712086712575No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCACC5565210.2691035389624252No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAATAGA5422490.2622023695401182No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCATC5311920.2568558007128726No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGC5287720.25568561923851846No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCCTGTAGGCACCATCAATAGATC5245010.2536203940001024No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGCTGTAGGCACCATCAATA5242750.2535111125896875No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATCA5055910.2444765379339711No Hit
TCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAA4888710.23639164774752397No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC4858580.2349347234573466No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC4830270.23356580455077772No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGACTGTAGGCACCATCAATAGAT4827450.233429444560791No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCACC4743360.22936330571044208No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTACTGTAGGCACCATCAA4640380.2243837483456076No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATC4625800.22367873818461237No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT4405840.21304265896564759No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC4365000.21106785684115895No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTACTGTAGGCACCATCAATAG4288320.20736002562407302No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAATAGATCGG4244340.2052333900355566No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGAT4150920.20071610270769838No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGA4105170.19850387946589243No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTCTGTAGGCACCATCAATAGAT4092790.1979052494389294No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCACCA4079910.19728244210877724No Hit
GCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA4060500.196343879198975No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCTGTAGGCACCATCAATAG4002960.19356155514796922No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGCAC3935530.19030100403988232No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCAC3807210.1840961409494224No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGATCG3761920.18190616082655042No Hit
GCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT3722070.1799792297623763No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATC3720560.17990621430674508No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT3680320.1779604249460834No Hit
ACAGTGAAACTGCGAATGGCTCATTCTGTAGGCACCATCAATAGATCGGA3606850.17440781201547173No Hit
GCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATCG3526140.17050511173468136No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAATA3495960.1690457697141851No Hit
AGTGAAACTGCGAATGGCTCATTCTGTAGGCACCATCAATAGATCGGAAG3426700.16569672967642599No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCCTGTAGGCACCATCAATAGA3348530.1619168500958364No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTGCTGTAGGCACCATCAAT3286960.1589396569811262No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGCA3234290.1563928198631826No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAATAGATCG3209250.15518202051947064No Hit
GTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCAT3100140.14990604941753732No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAA3088950.14936496137216446No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATCC3049200.14744286576862814No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA3022730.14616291933779527No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGCTGTAGGCACCATCAA3009230.1455101321516886No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGCTGTAGGCACCATCAAT3007980.14544968889371576No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAAT2988000.14448356385827787No Hit
TCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCAT2891430.1398139595203281No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGA2882810.1393971428133474No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCCTGTAGGCACCATCAATAGATC2818320.1362787542480126No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA2817720.13624974148418564No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCCTGTAGGCACC2771750.13402688022897646No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC2766680.13378172237463862No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATA2743810.13267585252676753No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTACTGTAGGCACCATCAAT2724940.13176340110440954No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCTGTAGGCACCATCAATAGATCGGA2644440.1278708552909586No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGAT2641720.1277393307616097No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTATCTGTAGGCACCATCA2575110.12451843043075297No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCTGTAGGCACCATC2572720.12440286292150893No Hit
TTGGCAATTTTTGACAGTCTCTACGGAGACTGCTGTAGGCACCATCAATA2561990.12388401799507005No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAAT2547780.12319689903843481No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATCCTGTAGGCACCATCAAT2525460.12211762422407177No Hit
ACGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAATAGATC2463210.11910754997702432No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTCTGTAGGCACCATCAATAGAT2439860.11797846991809165No Hit
ACAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC2268540.10969435875336601No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAATAG2263870.1094685427415795No Hit
TCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAAT2164310.1046543581305587No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATAG2159700.10443144339515485No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA2158770.10438647361122307No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACTGTAGGCACCATCAAT2099320.10151179226203479No Hit
AGTTATGGTTCCTTTGGTCGCTCGCTGTAGGCACCATCAATAGATCGGAA2070780.10013175179599887No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)