FastQCFastQC Report
Sat 30 Sept 2023
SRR13119872_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13119872_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168041904
Total Bases12.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC109034086.488505390893453No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA80668254.8004841697104315No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATC43671062.5988196372733317No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA40568582.414194259546119No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT37213192.21451846915517No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATCG36498282.1719749140666726No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA34415292.048018332379762No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT31779111.8911419856323455No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATC22150671.3181634742724648No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATCA21222571.2629332026611648No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA21086111.2548126091215914No Hit
TCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCAT19049331.1336059367668196No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATAG18922891.126081623069446No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATAGATCGGA17961331.0688601814461707No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGATCGG15472440.9207489103432202No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAGA14732630.8767235819941673No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC13907010.8275917892479963No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGATC13596930.8091392489816113No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCA13453950.8006306569818442No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGAT12777850.7603966448749593No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAA12225150.7275060392079347No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCCTGTAGGCACCATCAATAGA10163970.6048473480757514No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT9473910.5637825907994948No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCAC8712630.5184796049442525No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT8646930.5145698658591729No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGA8375520.4984185373191201No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC8372100.49821501665441736No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATA7993770.4757009894389199No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCAC7415050.44126196046909827No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAATAGAT7378000.4390571532681515No Hit
GCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC7132040.4244203279201121No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA6768190.4027679905364557No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATC6498140.3866975941905538No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATCAA6470930.3850783552178747No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCTGTAGGCACCATCAATAGAT6143330.36558321786213516No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGC6141070.3654487275983257No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC5767090.3431935643861783No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAATAGATC5562800.33103647766333333No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC5526990.3289054615805829No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCAT5334740.3174648628118377No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAATA5309860.3159842797306081No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCAC5144080.3061188832994894No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCCTGTAGGCACC5028650.2992497633209393No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA4899040.2915368062004344No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATC4829710.28741104956773167No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCACC4814580.28651067890780385No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAATAGATCGG4772610.28401308759272326No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATCA4660500.2773415373822472No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAG4638980.2760609044277432No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA4499040.2677332196854899No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA4243590.25253165424738344No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGA4010690.238672015999057No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCA3993170.23762941890970243No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGA3974670.23652850303338627No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAAT3957910.23553113275841006No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCCTGTAGGCACCATCAATAGATC3860990.22976352374583903No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGCAC3813730.2269511299990983No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG3653850.21743683646907502No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGCAC3546850.21106937707632734No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGACTGTAGGCACCATCAATAGAT3505270.20859499425809885No Hit
ACAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC3347220.19918960213638143No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAATAG3309540.19694730428667365No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATAGAT3238020.19269122301780156No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAG3221630.1917158710603517No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGGCACCATC2942830.17512477125943537No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC2942060.17507894935539411No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCTGTAGGCACCATCAATAGATCG2873230.17098294720583504No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAATA2834600.1686841158381543No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCACC2779670.16541528831998953No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGCA2671340.15896868200207967No Hit
GCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA2580180.1535438446353238No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA2553260.15194186326286807No Hit
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATAGATCGG2552360.15188830519320942No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAA2483390.1477839717883701No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAATAGATCG2482220.1477143462978139No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCACCA2469680.14696810386057038No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAATAG2468160.1468776502318136No Hit
GTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCAT2425540.14434137808864628No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATAG2416550.1438063924817229No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATA2408620.14333448637906412No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT2386700.14203004983804515No Hit
TCGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCG2376110.141399849885062No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCTGTAGGCACCATCAATAGATC2342050.13937297449331448No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA2330380.13867850485674096No Hit
TCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAA2296150.1366415129407246No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG2275170.13539301482801577No Hit
GTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATC2201890.13103219777847794No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT2195370.13064419931828433No Hit
ATTGGCAATTTTTGACAGTCTCTACGGAGACTGCTGTAGGCACCATCAAT2142240.1274824879394368No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATA2132770.12691893802869553No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTGTAGGCACC2100270.12498489662435626No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC2028800.12073179080379856No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATAGATC1980990.11788666712559982No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCTGTAGGCACCATCAATAGATCGGA1945180.1157556510428494No Hit
TCTAGATAACCTCGGGCCGATCGCACCTGTAGGCACCATCAATAGATCGG1902260.11320152620979587No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATAGAT1900890.11311999892598217No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGCTGTAGGCACCATCAATA1865970.11104194582322752No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCTGTAGGCA1846750.10989818349118442No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGAT1813760.10793498269336438No Hit
TCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCCTGTAGGC1763030.10491609283360655No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATAG1757670.1045971247743063No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGTAGGCACCATCA1689980.1005689628463148No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTGCTGTAGGCACCATCAAT1683760.10019881707600742No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)