FastQCFastQC Report
Sat 23 Sept 2023
SRR13362462_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13362462_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357254208
Total Bases27.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTC52285421.4635354554032294TruSeq Adapter, Index 3 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22551840.6312547058927854No Hit
AGTGATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG7309490.20460192871961919No Hit
GGACATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG5829280.16316896678792933No Hit
GCTCATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG4994620.13980577102117717No Hit
GCGGATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG4289020.12005512892377185No Hit
AGTTATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG4033460.11290167924348145No Hit
AGTAATTCATCTCCGGGGGTAGAGCACTGTTTCGGCATTCATCTCCGGGG3618100.1012752241675485No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)