FastQCFastQC Report
Wed 6 Sept 2023
SRR13577602_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13577602_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15826559
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA12199227.7080684436838105No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA9984506.3086991935518No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA3937422.487856014690243No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAAA2730801.7254540295208831No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA2371851.4986517284016063No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAA1994281.2600843935817003No Hit
GGGGGAGGTGGAGCACGAGCGTACGCGTTAGGACCCAAAAAAAAAACAAA1798111.1361345191964975No Hit
CCCCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAG1610171.0173847644330014No Hit
GGGGGAGGTGGAGCACGAGCGTACGCGTTAGGACCCGAAAAAAAAAACAA1582570.9999457241463542No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA1517500.958831291122726No Hit
GGGATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAA1213760.7669133890696014No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA1153180.728635959338982No Hit
CCCCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG1033450.6529846443563633No Hit
CCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAA1024280.6471905864060532No Hit
GGGATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAA994650.6284688920693374No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTATGCCG857190.541614889250405TruSeq Adapter, Index 27 (97% over 40bp)
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA754310.4766102347326415No Hit
CCCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAA660420.41728590529375337No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAA649090.41012705288622747No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAGAAAAAAAAAACAA627740.3966370706355058No Hit
CCCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAA588860.3720707704056201No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG587690.3713315067412948No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAACAAAA559510.35352599386891365No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAACAAAAAA559440.35348176441891127No Hit
CCCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAA541160.3419315594754362No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAGAAAAAAAAAAC511960.323481560331592No Hit
GGGCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG507850.32088465976716735No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAGAAAAAAAA498060.31469885525969354No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAACAAAAAAAA475060.30016632168748747No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAGAAAAAAAAAACAAA471850.29813808548023607No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAGAAAAAAAAA466100.2945049520871846No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAGAAAAAAAAAACA462860.29245776040136073No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAACAAAAAA462210.2920470583656245No Hit
GGGATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAA458680.2898166303869337No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAACAAAAAAAA453330.28643623670818147No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAACAAAAAA450000.28433217858664034No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAGAAAAAAAAAACAAAA448890.28363082587946No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA440910.2785886685791902No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAGAAAAAAA436630.27588435363618835No Hit
GGGGAGGTGGAGCACGAGCGTACGCGTTAGGACCCAAAAAAAAAACAAAA414000.2615856042997091No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAGAAAAAA402750.25447729983504314No Hit
CCCCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAACAAAAAA400070.25278394374923824No Hit
GGGATTGATCATCGACACTTCGAACGCACTTGCGGCCCCAAAAAAAAAAC394800.24945409801334578No Hit
CCCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGA387470.2448226427488123No Hit
GGGTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAA385940.2438559133416177No Hit
CCCCTTTCGCCGAATCCCGGGGCCGAGGAAGAAAAAAAAAACAAAAAAAA383580.24236474902725225No Hit
CCCCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC381970.24134747167719783No Hit
GGGGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC371230.23456141034826333No Hit
GGGGAGGTGGAGCACGAGCGTACGCGTTAGGACCCGAAAAAAAAAACAAA356560.22529218132633888No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAGAAAAAAAAAACAAAAA345880.21854403095454925No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAGAAAAA338820.21408317499716772No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAGAAAAAAAA336090.21235822644707544No Hit
GGGGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC335400.21192225043990928No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA330200.2086366341540192No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAGAAAAAAAAAA326870.20653257603247807No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAGAAAAAAAAA324910.2052941514324118No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAACAAAA322740.20392303848233845No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAACAAAAAAAA321340.20303844948229116No Hit
GGGGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAA315130.1991146654177955No Hit
CCCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC311710.19695374086053705No Hit
GGGCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA310160.1959743744676275No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAGAAAAAAAAAAC302280.19099540209593255No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAGAAAAAAA298520.1886196487815197No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAACAAAAAA298100.1883542720815055No Hit
GGGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAG291970.18448103595986973No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA291470.18416511131699567No Hit
CCCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAAAAA288480.1822758819526089No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAACAAAA288190.18209264565974195No Hit
GGGGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAA275170.17386596795930184No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAGAAAA274190.1732467556592687No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAGAAAAAAAAAACAAA271470.1715281256020339No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAGAAAAAA270160.1707004030377039No Hit
GGGGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC266510.16839415314472336No Hit
GGGATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGAAAAAAAAA266220.16821091685185643No Hit
CCCCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAACAAAA256760.1622336226086795No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAGAAAAAAAAAACAA253620.1602496158514305No Hit
CCCCTTTCGCCGAATCCCGGGGCCGAGGAAAAAAAAAACAAAAAAAAAAG250880.15851834880848073No Hit
CCCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAA242910.15348251000106844No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGAAA241170.15238309224386679No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAGAAAAAAAAAA238240.15053177383662486No Hit
GGGGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC233170.14732829795788208No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA230890.1458876815863764No Hit
GGGGGAATGCCTAAAGGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGC225450.1424504214719068No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAACAAAAAA222730.14073179141467201No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAA221050.13967028461461523No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGAAAAA217120.13718711692162522No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAACAAAAAA204570.1292574083854867No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA203150.1283601823997244No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTAAAAAA199410.12599706607102656No Hit
GGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAACAAAAAAAAA199320.12594019963530922No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA198150.12520093597098397No Hit
CCCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCAAAAAAAAAAC195390.12345703194231923No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGAA194480.12288204909228849No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACA189750.11989340197070002No Hit
GGGGAGCGTCGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC186980.11814317944917781No Hit
CCCCTGAGCGTCGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC185090.1169489842991139No Hit
GGGGGAGGTGGAGCACGAGCGTACGCGTTAGGAAAAAAAAAACAAAAAAA182030.11501552548472477No Hit
CCCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAA178330.11267768312745682No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGAAAA178270.11263977217031194No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAACAAAAAA173580.1096763990201534No Hit
GGGGGAGGTGGAGCACGAGCGTACGCGTTAGGACCCGAAAAAAAAAAAAA172560.10903191274869035No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGA169460.10707317996287127No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGAAA167830.1060432656271019No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTAAAAAAAAAACAAAAAAA161260.10189201581973695No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)