FastQCFastQC Report
Wed 6 Sept 2023
SRR13679794.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679794.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15248517
Total Bases762.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT691140.4532506341436351No Hit
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG320340.2100794457585613No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT319800.20972531295994226No Hit
ACTATTGTGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT287930.1888249198266297No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT279690.18342111564029473No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT258970.1698329089969864No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT233300.15299848503300353No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG214720.1408136935545929No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT212000.1390299135319192No Hit
TTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT200760.1316587049088118No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT200650.13158656674613015No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT196680.12898303487480128No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT187470.12294310325390988No Hit
GCGTTTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT184040.12069370418120004No Hit
GCGTTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT161510.10591849686103902No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG159750.1047642862581325No Hit
TATTTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT159130.10435768934119954No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG154570.10136723459730543No Hit
ACATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT153450.10063273694091038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)