FastQCFastQC Report
Wed 6 Sept 2023
SRR13679795.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679795.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15909532
Total Bases795.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT608340.38237454124986203No Hit
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG449020.28223331773681337No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT276920.17405917408507052No Hit
ACTATTGTGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT265170.16667366456788293No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG264720.1663908152672247No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT247820.15576825264250388No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT229920.14451713601632027No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG214300.1346991225134718No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT209870.13191462828699171No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG206930.13006667952269116No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT191930.1206383695007496No Hit
TTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT182430.1146671064868533No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG178820.11239802654157269No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT177220.11139234013923226No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT175730.11045579467705272No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG170230.1069987476690075No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG169120.10630105272738381No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT165550.10405711494216172No Hit
GCGTTTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT164740.10354798620097687No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG160960.1011720520754476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)