FastQCFastQC Report
Wed 6 Sept 2023
SRR13679796.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679796.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14173406
Total Bases708.6 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT560640.395557708570544No Hit
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG381920.2694624002162924No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT262470.18518484547750907No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG254020.1792229757617894No Hit
ACTATTGTGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT244000.17215339770835608No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT238540.16830111266127565No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT215770.1522358140308688No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT192700.13595885138688613No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG190750.1345830352986431No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG188460.13296733332834748No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG183950.12978531765759058No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT179910.12693490894143583No Hit
TTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT166930.1177769126207208No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT164110.11578727089310785No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT161850.11419273532416979No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG159240.1123512584060599No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG157780.11132116020665746No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG153940.10861186083288661No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT153880.10856952803017143No Hit
GCGTTTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT153040.10797686879215906No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG144080.1016551702533604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)