FastQCFastQC Report
Wed 6 Sept 2023
SRR13679797.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679797.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16310338
Total Bases815.5 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT677480.41536846140159694No Hit
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG443450.2718827776591754No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT318170.19507259751453343No Hit
GCGTTAATGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG300090.18398760344512788No Hit
ACTATTGTGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT300020.18394468587959367No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT294360.18047449415211383No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT263590.16160915855943633No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT239800.14702331735859797No Hit
TCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG229520.14072056630586072No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG224350.13755079753712032No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG222900.13666179082248325No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT222440.13637976110611566No Hit
TTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT205230.12582817106549232No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT198350.12160998748155924No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT196980.12077002941324698No Hit
GCGTTAACGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG191920.11766770253320318No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT189230.11601844180053167No Hit
GCGTTTTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT186790.11452245808762516No Hit
GCGTTAAAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG181060.11100934879461112No Hit
GCGTTATAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG179820.11024909477657667No Hit
CCGCGTTAGGCATTAACGCGAACTCGGCCTACAATAGTGATCGTATGCCG176280.10807869217670411No Hit
TATTTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGTCGTATGCCGT167490.10268947216176635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)