FastQCFastQC Report
Wed 6 Sept 2023
SRR13679810.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679810.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19005103
Total Bases760.2 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA641970.3377882245626346No Hit
CGCTAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCTCGTA631390.33222129866909955No Hit
CACTGCGCCGCTGGTGTAGTGGTATCATGCAAGATTTCGT596830.3140367089828453No Hit
ATCCGTCAGGATGGCCGAGCGGTCTAAGGCTGCGTTTCGT423640.22290855250823952No Hit
CAGCAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGTCGTAT361170.19003843336181866No Hit
TTGCGCGCCGCTGGTGTAGTGGTATCATGCAAGATTTCGT319000.16784965595819185No Hit
CGCTAGCAGAGTTGCGCAGCGGAAGCGTGCTGGGCTCGTA296030.1557634283802619No Hit
TCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA223780.11774732291637673No Hit
CACCTCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCGT216030.11366947077319181No Hit
TTGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA198350.10436670614202932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)