FastQCFastQC Report
Wed 6 Sept 2023
SRR13679811.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679811.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17260338
Total Bases690.4 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCTCGTA1042460.6039626802209783No Hit
TAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA574730.33297725687642965No Hit
CACTGCGCCGCTGGTGTAGTGGTATCATGCAAGATTTCGT556270.32228221718485467No Hit
CGCTAGCAGAGTTGCGCAGCGGAAGCGTGCTGGGCTCGTA491460.2847337056783013No Hit
CAGCAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGTCGTAT396480.22970581456747832No Hit
ATCCGTCAGGATGGCCGAGCGGTCTAAGGCTGCGTTTCGT386380.22385424897241293No Hit
TTGCGCGCCGCTGGTGTAGTGGTATCATGCAAGATTTCGT291230.1687278661634552No Hit
CACCTCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCGT217680.12611572264691456No Hit
TCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA211850.12273803676382236No Hit
ATGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGTCGTAT193330.1120082352964351No Hit
TAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCGT193010.11182283915876967No Hit
CAGCAGCAGAGTTGCGCAGCGGAAGCGTGCTGGGTCGTAT185520.10748341081153799No Hit
TTGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATCGTA177770.10299334810245314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)