FastQCFastQC Report
Wed 6 Sept 2023
SRR13679858.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679858.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20233691
Total Bases809.3 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACA2755871.3620204044828004No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA2069731.0229127251177257No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1758690.8691889186209278No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACT1506440.7445206116867159No Hit
ATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTT1390860.687398062963401No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG1206260.5961640908720016No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCAC1112590.5498700163010298No Hit
GCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGA1010090.4992119332058595No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA956180.47256825262380453No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT947090.46807574554736453No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTA913890.4516674688765387No Hit
CTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAG859820.42494471226233516No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTA821230.40587256175850467No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACC811390.4010093857813683No Hit
CTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAA587560.2903869590575442No Hit
TGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGG520480.257234332579261No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC512480.25328053097183306No Hit
GCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT511100.25259850019455177No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTG464350.22949347205114481No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCT443760.2193173751640272No Hit
GTGTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAG400990.1981793633203156No Hit
GTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACT383830.1896984588723827No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC374390.18503297297561774No Hit
CTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGC348990.17247965287203407No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGAC342350.1691979975378689No Hit
CCGGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA340600.16833310343624402No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC332200.1641816117484447No Hit
CACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG320440.15836952338552565No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC319160.15773691512833718No Hit
TCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT314800.15558209325228897No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA311540.1539709190972621No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC310750.15358048118852857No Hit
GGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGG291200.1439183785103766No Hit
GTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCC280360.13856097733231174No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT269690.13328759443840474No Hit
GTCTGACCTCGCGCGGAGCCCCGTTCTCTGGGAACTCACC267620.13226454827248277No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGG267370.13214099197225065No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCG252520.12480174773846255No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG252420.12475232521836971No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTC248980.1230521905271757No Hit
GTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAG243580.12038337444216184No Hit
CGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAG237210.11723515991224735No Hit
GAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGG235310.11629613203048322No Hit
GTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCAC230200.11377064125373862No Hit
GTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTC229300.11332583857290299No Hit
CCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAG223270.11034566061130417No Hit
GTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGA215280.10639680125588555No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCC214460.10599153659112419No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC209430.10350558383045386No Hit
CTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAAAGGA207910.10275436152504255No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA203850.1007478072092729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)