FastQCFastQC Report
Wed 6 Sept 2023
SRR13679859.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679859.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18803625
Total Bases752.1 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACA2608841.387413331206084No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA1620510.8618072313184294No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACT1475640.7847635761721476No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1382590.7352784370035034No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCAC1143570.6081646491035638No Hit
ATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTT1131030.6014957222344096No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1093800.5816963484434517No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA1006150.5350829959648737No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG948940.5046580114206702No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACC867650.4614269854881705No Hit
GCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGA794140.42233345963876645No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTA742380.3948068524021299No Hit
CTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAG697390.3708806147750766No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC685280.3644403672164277No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTA640720.3407428088998797No Hit
GCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT596850.31741220110484014No Hit
TGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGG547560.291199170372734No Hit
CTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAA445020.2366671320024729No Hit
GTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACT443920.2360821384174594No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCT436230.23199250144586483No Hit
CACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG390780.20782163013780586No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC376300.2001209873096278No Hit
TCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT370230.19689288634505314No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC354590.1885753411908608No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTG351960.18717667471032845No Hit
CTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGC340790.1812363307606911No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGAC327280.17405154591202493No Hit
GTGTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAG319810.17007890765743308No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC301080.16011806234170273No Hit
CCGGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA299900.15949052376868822No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGG293660.15617201470461148No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTC286720.15248123699552613No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCG273150.14526454340585926No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC270580.14389778566632763No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT267670.14235021172779183No Hit
CCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAG261810.1392337913567198No Hit
TTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCA259350.13792553297568952No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA255880.13608014412114683No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG253770.1349580200626209No Hit
GTCTGACCTCGCGCGGAGCCCCGTTCTCTGGGAACTCACC250800.1333785373830844No Hit
GTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGA244090.12981007651450185No Hit
TCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA241860.12862413497397443No Hit
TCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAA222680.11842397410073856No Hit
GGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGG220910.11748266624121678No Hit
CGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAG220120.11706253448470706No Hit
AGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATA215670.11469596952715234No Hit
GTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAG209400.11136150609257524No Hit
GCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGC207870.11054783319705641No Hit
GTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCC198760.10570302268844438No Hit
TAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT193610.10296418908588105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)