FastQCFastQC Report
Wed 6 Sept 2023
SRR13679860.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679860.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18647326
Total Bases745.8 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAA1206330.6469184911552466No Hit
GTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACC588870.31579326708826777No Hit
GGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGACT529800.2841158029842992No Hit
CAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC389990.2091399056358No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGT364560.19550256160052118No Hit
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCT355940.19087991490039913No Hit
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTA348660.18697586989147935No Hit
CCGGCTTCTATTGACTTGGGTTAATCGTGTGACCGCGGTG341790.18329169554927072No Hit
GTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTT318630.17087168422968527No Hit
GGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA310930.16674240585486627No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTC292750.15699301873094298No Hit
CTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAAT289910.15547001216152923No Hit
GTTCAGATATGTTAAAGCCACTTTCGTAGTCTATTTTGTG282670.15158741794936173No Hit
GTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGC280510.1504290749247372No Hit
ACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCG277010.1485521302089104No Hit
GGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAAC276780.14842878812758462No Hit
GGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCT272040.14588686871243628No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGG262540.1407923044837635No Hit
CTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTAT257370.1380197890035279No Hit
CTGGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGT253370.13587470932829726No Hit
GTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCG253000.13567628945833843No Hit
CTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTA252800.13556903547457688No Hit
CCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACC240260.1288442106927288No Hit
CCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAAC240110.12876377020490765No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAG229390.12301495667528953No Hit
CCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATC223910.12007619752022354No Hit
GCGGTGTGTACGCGCTTCAGGGCCCTGTTCAACTAAGCAC221450.11875697351995669No Hit
GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCA221130.11858536714593824No Hit
ACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTT217400.11658508034878567No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCAT215240.1154267373241611No Hit
GTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCC215000.11529803254364727No Hit
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGAT214890.11523904285257844No Hit
GTTTTAGTTAAATGTCCTTTGAAGTATACTTGAGGAGGGT214020.11477248802321577No Hit
GTTTTGATCTGATAAATGCACGCATCCCCCCCGCGAAGGG213040.11424694350278426No Hit
CCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGG213000.11422549270603194No Hit
ATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGT212460.11393590694987582No Hit
ATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC207840.11145833992498443No Hit
CCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGC207120.11107222558344292No Hit
CTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA206700.11084699221754368No Hit
GTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCG202840.10877699033094611No Hit
GTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTT198820.1066211852573393No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCG196830.10555400811891205No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTA195190.10467452545206749No Hit
AGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCG193300.10366097530552101No Hit
GTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCGA190570.10219695842717609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)