FastQCFastQC Report
Wed 6 Sept 2023
SRR13679864.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679864.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19732012
Total Bases789.2 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACA3053141.5473029308921968No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACT1965780.9962390049225593No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA1934440.9803561846607433No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1574870.7981294558304547No Hit
ATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTT1526110.7734183417281523No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG1272890.6450888029056541No Hit
GCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGA1110100.5625883462872412No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCAC1082300.5484995650722289No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT999680.5066285181663178No Hit
CTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAG924830.4686952349309335No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTA908780.4605612443373742No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACC861150.43642280371611364No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA860490.43608832185992996No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC730630.3702764827023215No Hit
TGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGG680960.34510418907103846No Hit
CACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG619920.31416968528095357No Hit
TCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT588980.2984895812956124No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTA582180.29504340459553746No Hit
GCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT543850.2756181174023206No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCT525140.26613606357020253No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC479250.24287943875160833No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGAC437680.22181214971894403No Hit
CTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAA417060.21136212566665782No Hit
GTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACT392450.19889000675653348No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTG375370.19023402175105103No Hit
CCGGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA361050.18297677905324605No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA350370.1775642544713636No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC324750.1645802769631399No Hit
CTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGC303280.1536994808233443No Hit
CGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAG295820.14991882226708558No Hit
TTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCA291660.14781057299174558No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC289380.1466550902158381No Hit
TCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA271730.13771023451637876No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC266860.13524216385029567No Hit
GGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGG266810.13521682431573626No Hit
CCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAG260910.13222675923773006No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCG259130.1313246718074163No Hit
AGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATA248030.12569929513523506No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTC232620.11788965058403572No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGG229670.11639461804503261No Hit
TTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT225640.11435225155954698No Hit
TCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAA221920.11246699018832951No Hit
TAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT218020.11049050649269826No Hit
CCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTG216250.1095934869692964No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA215280.10910189999884451No Hit
GCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGC215080.10900054186060702No Hit
GGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCT214720.10881809721177951No Hit
GTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGA209800.10632468701113702No Hit
GGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCA208460.10564558748494578No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT206500.10465227773021829No Hit
GTCTGACCTCGCGCGGAGCCCCGTTCTCTGGGAACTCACC205940.1043684749431533No Hit
GTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCC205870.10433299959477016No Hit
GTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCAC202940.1028481028695908No Hit
GTGTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAG200520.10162166939691704No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG198550.10062329173527768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)