FastQCFastQC Report
Wed 6 Sept 2023
SRR13679865.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13679865.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18149182
Total Bases725.9 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACA2964541.6334289887004274No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA1622980.8942441593235442No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACT1601500.8824089151786566No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1466410.8079758084964932No Hit
ATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTT1442830.7949834874100663No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGG1209090.666195313926545No Hit
GCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGA1085620.5981646996542324No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCAC1056170.5819380730216932No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1045140.575860664133513No Hit
CTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAG853020.47000465365326105No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTA835130.46014746008938584No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACC832470.45868182929676937No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA792120.43644942234862155No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC601840.3316072316647659No Hit
GCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT590490.32535350629025594No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTA578790.31890693475882276No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCT548250.3020797300947227No Hit
TGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGG520530.28680631446640403No Hit
CACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG471630.25986295139913196No Hit
TCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT452540.24934457101151997No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGAC445670.2455592764456271No Hit
CTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAA427550.2355753554072024No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA382320.2106541220425251No Hit
GTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACT370920.20437284721702612No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCAC352460.19420158991187592No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTG347210.19130889755802769No Hit
CTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGC300190.16540139384794314No Hit
CCGGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA287130.1582054772496083No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC273730.15082222438454804No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCC272470.15012797821962445No Hit
CGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAG262750.14477236494735687No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC260000.14325714514296017No Hit
CCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAG254990.1404966901538593No Hit
TTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCA254750.14036445278911194No Hit
GGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGG254210.14006691871843038No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCG251270.1384470110002754No Hit
AGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATA244630.1347884439089321No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGG216330.11919545464914066No Hit
GCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGC215020.11847365903322805No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT213300.1175259579192054No Hit
GGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCT211040.1162807227345012No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTC210670.11607685679718238No Hit
GTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCC210060.1157407534951162No Hit
GTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCAC207160.11414288533775241No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA203140.11192790947823433No Hit
GGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCA202790.11173506332131111No Hit
TCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCA198670.10946498855981497No Hit
GTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGA195580.10776243248869288No Hit
GTGTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAG194860.10736572039445084No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG192950.10631333136666987No Hit
GTCTGACCTCGCGCGGAGCCCCGTTCTCTGGGAACTCACC188130.10365756429132729No Hit
CTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAAAGGA187290.10319473351471156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)