FastQCFastQC Report
Wed 6 Sept 2023
SRR13723998_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13723998_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39910520
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length48
%GC31

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAA4219061.0571297993611708No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA4146281.0388940058911786No Hit
ATGTGGCGTACGGAAGACCCGCTCCCCGGCGCAAAAAAAAAAAAAAAA2855300.7154254066346417No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA2710640.6791793241481193No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA2452920.6146048710966432No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2231960.5592410221665867No Hit
ATGGTAATCCTGCTCAGTACGAGAGGAACCGCAAAAAAAAAAAAAAAA2003470.5019904526425615No Hit
ATGAGAGGTGTAGAATAAGTGGGAGGCCCAAAAAAAAAAAAAAAAAAA1821460.4563859353373496No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA1818420.4556242314056544No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAAAAAAAAAAAAA1734870.43468990130922874No Hit
TTGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAAAAAAAAAAAAAAA1648680.4130940914826467No Hit
ACGATCCTTCTGACCTTTTGGGTTTTAAGCAAAAAAAAAAAAAAAAAA1427260.3576149847208205No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAAAAAAAAAAAAAA1260600.3158565711496618No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAA1249920.3131805849685747No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA1167610.2925569498969194No Hit
ACGGGAAACCTCACCCGGCCCGGACACGGACAAAAAAAAAAAAAAAAA1050050.2631010570646536No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAA988030.2475612946160561No Hit
ACAAGACACGTGCTGAAGTCAAAAAAAAAAAAAAAAAAAATCGTATGC969870.2430111158661927No Hit
AAGAACGAAAGTCGGAGGTTCGAAGACGATCAAAAAAAAAAAAAAAAA871660.21840356878336842No Hit
ATGTGGCGTACGGAAGACCCGCTCCCCGGCAAAAAAAAAAAAAAAAAA771460.19329740629788836No Hit
ACAAGACACGTGCTGAAGTCAAAAAAAAAAAAAAAAAAATCGTATGCC743550.18630426263551564No Hit
AAGACACGTGCTGAAGTCAAAAAAAAAAAAAAAAAAAATCGTATGCCG727320.1822376656580771No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGGAAAAAAAAAAAAAAAAAA677610.16978230301183747No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAA663170.16616420933628526No Hit
ATATGCTTGTCTCAAAGATTAAGCCATGCAAAAAAAAAAAAAAAAAAA650870.16308231513896587No Hit
ATTAGTCAGCGGAGGAGAAGAAACTAACCAAAAAAAAAAAAAAAAAAA649190.16266137349250273No Hit
ACCATGGTGACCACGGGTGACGGGGAATCAAAAAAAAAAAAAAAAAAA643010.16111290957872762No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAA613650.15375645318577658No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAAA593990.14883043368014248No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAAAAAAAAAAAAAAAAAAA571760.1432604736796213No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAA551880.13827933086314084No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAAAAAAAAAA550500.13793355736783183No Hit
AAGTGGCGTTCAGCCACCCGAGATTGAGCAAAAAAAAAAAAAAAAAAA544290.13637757663894132No Hit
AATTATTCCCCATGAACGAGGAATTCCCAGTAAAAAAAAAAAAAAAAA539920.13528262723712947No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAAAA537530.13468378763293487No Hit
AAGACACGTGCTGAAGTCAAAAAAAAAAAAAAAAAAATCGTATGCCGT512800.12848742637279595No Hit
ATGACCCGCCGGGCAGCTTCCGGGAAACCAAAAAAAAAAAAAAAAAAA512340.12837216854102626No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAAAAAAAAAAA500470.12539801536036113No Hit
AGATCCCCGAATCCGGAGTGGCGGAGATGGGCGCAAAAAAAAAAAAAA482400.12087038705584391No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATACAAAAAAAAAAAAAAAAA474070.11878321805879753No Hit
GGAACTACAAGACACGTGCTGAAGTCAAAAAAAAAAAAAAAAAAAATC470390.11786115540464018No Hit
ATGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAAAAAAAAAAAAAAA444610.1114017056154618No Hit
ACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAAAAAAAAAAAAA433630.10865055128322057No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAAAAAAAAAAAAAAA421290.10555863466574728No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAA413390.10357920668535514No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAAAAAAAAAAAAA408920.10245920123315858No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)