FastQCFastQC Report
Wed 6 Sept 2023
SRR13762819_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762819_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13644672
Total Bases638.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT6260834.588479664443381No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT3809142.791668425594987No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT3136892.2989852742521037No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3130512.2943094564676967No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2788792.0438673791498982No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT2675971.9611830903667014No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2358171.7282716653064287No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT2353271.7246805199861164No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2206871.6173858924567772No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2204771.6158468301766433No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA2105991.543452272066342No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1836381.3458586619011437No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT1830991.3419084020487997No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1805741.323403010347189No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1779361.3040694565615063No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1426901.0457561750110227No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1402481.0278590793534648No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1263950.926332270940628No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1089510.7984874975375004No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1059760.7766841152356027No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT912570.6688105071342132No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT880880.6455853244401917No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT864730.6337492026191615No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT795310.5828722009587333No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT696580.5105142871884352No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT694270.5088213186802878No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT670120.4911221024587473No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT650200.4765229974014766No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT645650.47318836246118634No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC643030.4712681990450192No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT629470.4613302540361542No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT572820.41981221681254044No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT538510.39466687070235185No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT478930.35100147515455116No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA450250.3299822817287217No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT437710.32079188125592173No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT427280.31314787193125637No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT413580.30310732277038244No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT412930.302630946350341No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT412840.30256498653833525No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT411950.3019127172862785No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT406640.2980210883779397No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT401630.2943493255096202No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT382000.27996275762436795No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT361630.26503385350706854No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT355480.26052659968667624No Hit
TCTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT351700.25775628758243513No Hit
TCCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT350530.25689881002636045No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT325450.2385180090807606No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT323870.2373600479366598No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT317080.2323837465642267No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT315520.23124044315612716No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT313180.22952548804397788No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT311880.22857273520389496No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT304580.2232226615634293No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT292880.21464788600268295No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT291940.21395897241062298No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT288220.2112326335143857No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCAT287300.21055837765832702No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT286760.21016261878629255No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT282950.2073703200780495No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT263080.19280785936078199No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT260900.19121016613664293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG259450.19014748027655046No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT258300.1893046604564771No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT256220.1877802559123444No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT247640.18149208716779708No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT245090.1796232258276344No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT244970.17953527941162675No Hit
TCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT241750.17717538391542134No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC225460.1652366579423822No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT224810.16476028152234073No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT214190.1569770237056633No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT213890.15675715766564413No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA213680.15660325143763076No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT212140.15547460576553251No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT198780.14568323811668027No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT197330.1446205522565878No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT194530.14256846921640917No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT188830.13839101445604554No Hit
GCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT186600.1367566768919033No Hit
CCGCCACGCAGTTTTATCCGGTAACTGTAGGCACCATCAAT186420.13662475726789183No Hit
TTGTCCTAAGGCGAGCTCAGGGAGGACACTGTAGGCACCATCAAT185380.13586255499582547No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA183580.13454335875571066No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN182980.13410362667567238No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCA181700.13316553157159072No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT179410.13148722079944464No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT176190.12912732530323925No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT173450.12711921547106447No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT170280.12479596431486223No Hit
CTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT170030.1246127426148463No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA158780.11636776611412866No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT157000.1150632276100151No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT152790.11197777418174655No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT152400.11169194832972168No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT151430.11098104813365979No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT146220.10716270790532745No Hit
CCGTCGCCGCGCTCTCCCCCCTCCCGGCGCCTGTAGGCACCATCAAT141990.1040625967410576No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAAT140080.10266278295293578No Hit
CGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT139540.10226702408090133No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT138170.10126296916481393No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT137880.10105043199279543No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)