FastQCFastQC Report
Wed 6 Sept 2023
SRR13762826_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762826_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18340690
Total Bases846.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT4028492.1964767955840263No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAAT3245751.7696989589813688No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT2449491.335549534941161No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1937921.05662327862256No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT1615290.8807138662722067No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAAT1551120.8457260877317049No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT1407760.7675610895773278No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT1383690.7544372649011569No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT1251900.6825806444577603No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT1165000.6351996571557559No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT1069580.5831732612022775No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT1036300.5650278152021544No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA1025370.5590683883757918No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT994360.5421606275445471No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT977670.5330606427566248No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT941590.5133885366362989No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT939200.5120854231765545No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA845310.46089323793161546No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT776040.4231247570293157No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT732420.3993415732995869No Hit
CGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT729760.39789124618539434No Hit
AACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT699300.3812833650206181No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAAT685570.37379727807405283No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT683940.372908543789792No Hit
AGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT678040.36969165282222205No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT659430.3595448153804464No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT629590.34327498038514365No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT596850.32542396169391663No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT596560.32526584332432423No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT592920.32328118516806076No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT581920.3172835918386931No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT576270.314203009810427No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC576240.3141866527377105No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT576080.3140994150165561No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT557350.3038871492839146No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT519330.28315728579459115No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT515270.28094362862029726No Hit
AGCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT503170.2743462759579928No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT501960.2736865406917624No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT470270.25640801954561143No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT463920.25294577248729466No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAAT454300.24770060450288403No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT450580.2456723274860433No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT418640.22825749740058854No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAAT410600.223873801912578No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT384560.20967586279469314No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAAT383600.2091524364677665No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAAT381570.20804560788061954No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT381150.20781660886258915No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT376040.20503045414321927No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC373020.2033838421564292No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT360060.19631758674291971No Hit
TATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAAT359040.19576144627056016No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAACTGTAGGCACCATCAAT344090.1876101717001923No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG339060.18486763584139965No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT325750.1776105479128648No Hit
ACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCA323700.17649281461057353No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT321980.17555500910816332No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT312140.17018988925716536No Hit
AGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAAT308250.16806892216159808No Hit
TCGGGTGTTGACGCGATGTGATTTCTGCCCACTGTAGGCACCATCAAT301760.16453034209727113No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCAT298850.1629437060437748No Hit
CCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCAT298120.16254568394100768No Hit
TTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT295960.16136797470542275No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCA295810.16128618934184047No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT293710.16014119425168843No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATACTGTAGGCACCATCAAT292400.1594269354097365No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA291480.15892531851309846No Hit
CAGTGCGGTAACGCGACCGATCCCGGACTGTAGGCACCATCAAT289190.15767672862907556No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA277950.15154827871797627No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT275790.15037056948239133No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT273880.14932916918611025No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT270780.14763893833874298No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGCTGTAGGCACCATCAAT268100.14617770650940612No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT268080.14616680179426184No Hit
CGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT267430.14581239855207193No Hit
TCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT266990.14557249481889722No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT264220.144062191771411No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTGCTGTAGGCACCATCAAT261090.14235560385132728No Hit
TGTCCGGTGCGGAGTGCCCTTCGTCCTGGGACTGTAGGCACCATCAAT260770.14218112840901842No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT259980.14175039216081836No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT256950.14009832781645618No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT251060.13688688920645842No Hit
TTGCCAAGAATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT250470.13656520010970144No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT249320.13593817898890392No Hit
TGCACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT245280.13373542652975434No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT244200.13314657191196186No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCTGTAGGCACCATCAAT241030.13141817456158955No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAAT240800.13129277033743006No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT240330.1310365095315389No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCCTGTAGGCACCATCAAT239500.13058396385305024No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT238500.130038728095835No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT237260.12936263575688808No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT235830.12858294862407033No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT234460.12783597563668542No Hit
TAGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT234310.12775419027310314No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT232030.1265110527466524No Hit
AGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT224720.12252537936140898No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT222710.12142945548940635No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT213890.11662047611076792No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAAT212870.11606433563840837No Hit
ACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAAT210120.11456493730606646No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT206130.11238944663477764No Hit
TTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT204110.11128807040520286No Hit
TCGACTGCATAATTTGTGGTAGTGGGCTGTAGGCACCATCAAT202660.11049747855724076No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT198540.10825110723751397No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT198530.10824565487994181No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT197950.10792941814075697No Hit
TTAAAACAAAGCATCGCGAAGGCCCGCCTGTAGGCACCATCAAT195770.10674080419002775No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT195310.10648999574170874No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT193200.10533954829398458No Hit
TGAAGGGCAGGGCGCCCTGGAATGGGTTCTGTAGGCACCATCAAT189730.10344758021644769No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAAT187360.10215537147184757No Hit
AGCTACCATCTGTGGGATTATGACTGAACCTGTAGGCACCATCAAT187100.10201361017497161No Hit
TAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAAT186490.10168101636307031No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)