FastQCFastQC Report
Wed 6 Sept 2023
SRR13762827_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762827_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18474342
Total Bases852.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT4053042.1938751593967463No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAAT3222651.7443923036609368No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT2494031.3499966602328786No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1963751.062960726828593No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT1591870.8616653302185269No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAAT1514140.8195907599848482No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT1423150.7703386675422594No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT1406960.7615751619191633No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT1250940.6771228983419274No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT1147770.6212778782594801No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT1080610.5849247567247591No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT1059370.5734277302000796No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA1031330.5582499230554463No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT1009430.5463956442941242No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT977040.5288632201352557No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT950360.5144215691146131No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT931270.5040883188153602No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA850620.460433178080172No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT793700.42962287912608743No Hit
CGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT743120.4022443668088422No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT742080.4016814238904963No Hit
AACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT689960.37346932302108515No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAAT686720.37171553931393064No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT685240.37091442823782306No Hit
AGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT673280.3644405846768453No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT652430.35315466174654553No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT628120.33999587103021045No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT608920.3296030786915171No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT608620.32944069131122505No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT593230.3211102187022412No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT590370.31956212567679No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT586870.317667606240049No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT578950.31338057940033803No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC576170.3118757896762981No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT573250.3102952191747885No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT530620.28721997243528347No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT523450.2833389140463027No Hit
AGCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT503990.27280538597802295No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT503430.2725022628681444No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT482570.26121092702516824No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT467460.2530320159711236No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAAT446830.2418651771197047No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT445930.24137801497882846No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT425020.2300596145724703No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG417520.22599993006516822No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAAT412040.22303365391849952No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT389510.21083836165856407No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT389430.21079505835715287No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAAT385350.2085865899851805No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAAT380830.20613995345544647No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT378250.20474342198493456No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC372080.20140365486359407No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT365380.1977770033704042No Hit
TATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAAT362160.1960340454886025No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAACTGTAGGCACCATCAAT359430.19455632032794457No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT330720.1790158480339922No Hit
ACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCA328900.17803069792688692No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT327280.17715380607330966No Hit
TCGGGTGTTGACGCGATGTGATTTCTGCCCACTGTAGGCACCATCAAT312870.16935379890661328No Hit
AGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAAT312570.1691914115263212No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT311400.1685581007431821No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCAT303930.1645146549739092No Hit
CCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCAT302490.1637351955485072No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCA296290.1603791896891375No Hit
TTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT294850.1595997302637355No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATACTGTAGGCACCATCAAT291810.15795420481010908No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT289110.15649271838748033No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA288680.15625996314239501No Hit
CAGTGCGGTAACGCGACCGATCCCGGACTGTAGGCACCATCAAT288360.15608674993675012No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA282820.15308799631402298No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT280890.15204330416747724No Hit
CGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT275980.14938556404336348No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT275150.14893629229122204No Hit
TCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT272840.14768590946297303No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT271990.14722581188547879No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT271520.14697140498968786No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGCTGTAGGCACCATCAAT267990.14506064681491768No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT266870.14445440059516057No Hit
TGTCCGGTGCGGAGTGCCCTTCGTCCTGGGACTGTAGGCACCATCAAT261990.14181289920907603No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTGCTGTAGGCACCATCAAT260640.14108215599776167No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT259020.1402052641441844No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT256010.13857597742858718No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT253140.13702247149045957No Hit
TTGCCAAGAATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT251420.1360914505101183No Hit
TGCACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT249600.135106300403013No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT247440.13393711126491No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT246540.13344994912403374No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAAT245260.13275709630145419No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT244790.1325026894056633No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT240010.12991531714634275No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCCTGTAGGCACCATCAAT239980.12989907840831352No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT238060.1288597991744442No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCTGTAGGCACCATCAAT236420.12797208149551417No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT235490.12746868061660868No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT234650.12701399595179086No Hit
TAGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT231340.12522232185590154No Hit
AGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT229840.12441038495444115No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT229170.12404771980512215No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT226280.12248338804164176No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT218540.11829379363010602No Hit
ACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAAT210860.11413667669462868No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAAT210230.1137956631960153No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT208350.11277803561285159No Hit
TCGACTGCATAATTTGTGGTAGTGGGCTGTAGGCACCATCAAT206550.11180371133109909No Hit
TTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT204020.11043424442396921No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT202900.1098279982042121No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT201590.10911890664360334No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT196590.10641245030540195No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT196550.10639079865469633No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT194410.10523243534194614No Hit
TTAAAACAAAGCATCGCGAAGGCCCGCCTGTAGGCACCATCAAT193770.10488600893065636No Hit
AGCTACCATCTGTGGGATTATGACTGAACCTGTAGGCACCATCAAT191120.10345158707140963No Hit
TGAAGGGCAGGGCGCCCTGGAATGGGTTCTGTAGGCACCATCAAT191050.10341369668267482No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAAT190970.1033703933812636No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAATCTGTAGGCACCATCAAT186990.10121605413605529No Hit
TAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAAT185810.10057733044023975No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)