FastQCFastQC Report
Wed 6 Sept 2023
SRR13762829_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762829_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16210774
Total Bases750.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3967512.4474525398972315No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT3116811.9226780905094352No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAAT2244551.3846038443321707No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT2172101.3399113453805476No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1994691.2304717837655377No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT1523740.9399551187376988No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT1387310.8557950410017436No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1144710.7061414834356459No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT905540.5586038026315091No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT795570.49076620277353816No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT795230.49055646571841666No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT792240.4887120133807306No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT790040.48735489125935627No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA755970.4663380045888No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT753570.46485750772911894No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT698430.43084309237794566No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT684780.42242276648850946No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA684720.4223857540670174No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT673480.4154520937741776No Hit
AGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT660460.40742039831040766No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT652230.4023435278290845No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT631940.38982716062786393No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT606790.3743127872857891No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT555790.34285222901756573No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT544550.3359185687247259No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT534560.32975600054630333No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT510370.31483382594810094No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT495160.305451177099872No Hit
AACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT490420.30252719580200177No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT478300.2950506866606123No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT468310.28888811848218965No Hit
AGCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT447300.2759276022230647No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT444490.2741941871498548No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT435930.2689137483503255No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT433760.2675751324396972No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT424840.2620726191112158No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT415360.25622465651547544No Hit
TCGGGTGTTGACGCGATGTGATTTCTGCCCACTGTAGGCACCATCAAT407220.2512033046663904No Hit
TTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT393130.2425115543526793No Hit
TGTCCGGTGCGGAGTGCCCTTCGTCCTGGGACTGTAGGCACCATCAAT372530.22980395630708317No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAACTGTAGGCACCATCAAT371030.2288786457697825No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT359440.22172907968490582No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT342750.21143345777320685No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAAT334270.20620236886900034No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT334020.20604815044611688No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT332000.20480206558921862No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT324650.20026804395644526No Hit
TCGGGATAAGGATTGGCTCTAAGGGCTGCTGTAGGCACCATCAAT323920.19981772616162558No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT320730.1978498990856328No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT318670.1965791392810732No Hit
TTGCCAAGAATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT302340.18650559189832638No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAAT296240.18274266237997028No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAAT282740.17441486754426408No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAAT282630.17434701143819537No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT282020.17397071848635975No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT278550.17183016677673751No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT277600.1712441367697804No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCACCATCAAT275290.16981915854233734No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT266820.1645942383750461No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTCTGTAGGCACCATCAAT265190.16358873425784606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG263790.16272511108969875No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT258770.15962840515819912No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT258420.15941249936616228No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTACTGTAGGCACCATCAAT251870.15537197668661595No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAAT248860.15351518687509924No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT244300.15070224284170516No Hit
TGCACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAAT243840.1504184809435996No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTACTGTAGGCACCATCAAT242870.14982011346281182No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT240510.1483642915507921No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT239100.14749449964572944No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA233340.1439413071824948No Hit
TAGCGAGCGCACGGGGTCGGCGGCGACCTGTAGGCACCATCAAT232340.14332443349096102No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT230990.1424916540073904No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT227320.14022772755946136No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT222520.1372667338400992No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT222240.13709400920646972No Hit
TGGGCCGCCGGTGAAATACCACTACTCTCTGTAGGCACCATCAAT221090.13638460446120584No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT220530.13603915519394694No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT218690.13490410760152477No Hit
CGCGCGCTACACTGACTGGCTCAGCGTCTGTAGGCACCATCAAT218390.13471904549406463No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAAT218370.13470670802023396No Hit
ATGTGTTGTTGCCATGGTAATCCTGCTCTGTAGGCACCATCAAT216040.13326939231896023No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT213360.13161617082564966No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGCTGTAGGCACCATCAAT210440.12981489964637097No Hit
AGCTACCATCTGTGGGATTATGACTGAACCTGTAGGCACCATCAAT208540.1286428396324568No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAAT208060.12834674026052056No Hit
ACGCGCGCTACACTGACTGGCTCAGCGTGCTGTAGGCACCATCAAT207930.12826654668062115No Hit
TTGCCAAGAATGTTTTCATTAATCAAGAACGCTGTAGGCACCATCAAT206720.12752012951386527No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAAT204560.12618768234015232No Hit
TGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT203890.12577437696682467No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT201700.12442342358236565No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGACTGTAGGCACCATCAAT201600.12436173621321227No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAATCTGTAGGCACCATCAAT197310.12171534807653231No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT194670.1200868015308831No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGCTGTAGGCACCATCAAT192930.11901344130761429No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCCTGTAGGCACCATCAAT191700.11825468666702775No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCTGTAGGCACCATCAAT190820.11771183781847802No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT190030.11722450760216631No Hit
AGTGCGGTAACGCGACCGATCCCGGAGACTGTAGGCACCATCAAT188980.11657679022605583No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT188880.11651510285690245No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCTGTAGGCACCATCAAT187010.11536154905373427No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT183620.1132703472394347No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA182840.11278918576003835No Hit
AGGAACCGCAGGTTCAGACATTTGGTGTATGTCTGTAGGCACCATCAAT180400.11128401395269591No Hit
ACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT179810.11092005847469096No Hit
TAGCCTCTGGCATGTTGGAACAATGTAGGTACTGTAGGCACCATCAAT179230.11056227173360136No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCCTGTAGGCACCATCAAT178250.10995773551589826No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTCTGTAGGCACCATCAAT176530.10889671276646012No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT172900.10665746126619247No Hit
GCGGGTGTTGACGCGATGTGATTTCTGCCCACTGTAGGCACCATCAAT169920.10481917766542177No Hit
ACTATGCCTGGGCAGGGCGAAGCCAGAGGCTGTAGGCACCATCAAT168310.10382601102205237No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCCTGTAGGCACCATCAAT164530.10149422846805466No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAAT163880.10109326056855768No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)