FastQCFastQC Report
Wed 6 Sept 2023
SRR13762835_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762835_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15839118
Total Bases749.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT7826674.941354689067913No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT4936883.1168907258598617No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT4699062.966743476499133No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA4109772.5946962450813236No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT4089082.581633649045357No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2922571.8451595600209556No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2828021.785465579585934No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2656961.677467141794133No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1990011.2563894024907196No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1609151.0159340943100492No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1559210.9844045609105255No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1533400.9681094616505792No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1392710.8792850713025814No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1365390.8620366361308754No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1347150.8505208433954466No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT1292070.8157461798062241No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1270200.8019385927928563No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1193630.7535962545389207No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1154580.7289421039732137No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1129830.7133162338963571No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1108110.6996033491258794No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT1056090.6667606112916136No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1018360.642939840463339No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT1000930.6319354398395163No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT996580.6291890747957052No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT889190.5613885823692961No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT858520.5420251304397127No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT824670.5206539909608603No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT824370.5204645864750802No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN801700.5061519208329656No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT766430.4838842667880876No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT757750.478404163666184No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC732810.462658337415No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA712780.45001243124775No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT637410.40242771093693475No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT634240.4004263368705252No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT618260.39033739126130634No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT590150.37259019094371293No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA565550.3570590231097464No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT543210.34295470240198983No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT522440.329841598503149No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT492470.31092009037371904No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT472270.2981668549978604No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT443800.2801923692973308No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG402560.2541555659854292No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC400290.25272240537636No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT389070.245638677608185No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT376830.23791097458835775No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA356670.22518299314393644No Hit
GACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT353420.22313111121465223No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA347580.2194440372248No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT346610.21883162938744444No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT342350.2161420856893673No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT329540.2080545141465579No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT318700.2012106987270377No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT313550.1979592550544797No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT313410.19787086629444897No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT291640.18412641410967454No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT286210.1806981929170551No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT285920.18051510191413436No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCA283500.17898723906217506No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT278230.175660033595305No Hit
TTGCCAAGAATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT263480.1663476463777844No Hit
ACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT262310.1656089688832421No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT257030.16227544993351273No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT252650.15951014444112355No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT247340.15615768504281616No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT246460.15560209855119458No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT239800.1513973189668768No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT238460.1505513122637258No Hit
GGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA235810.14887823930600175No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT228980.1445661305130753No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT226690.14312034293828735No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT218970.13824633417087998No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT217920.1375834184706497No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT217520.13733087915627626No Hit
AGACAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT214960.13571462754428623No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT214900.13567674664713023No Hit
TGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGCTGTAGGCACCATC210260.13274729060039833No Hit
TTGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT209820.13246949735458755No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA205710.12987465589940048No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT203450.1284478087731905No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT203440.1284414952903312No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT202670.12795535711016232No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT202540.12787328183299096No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT201120.12697676726696525No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT198650.12541733700070926No Hit
GCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGCTGTAGGCACCATCAA191820.12110522820778279No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT190700.12039811812753715No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT185850.1173360789407592No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT181940.11486750714275883No Hit
GACAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT178780.11287244655920865No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTCTGTAGGCACCA176040.1111425522557506No Hit
CGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA171970.10857296473200087No Hit
TCAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT167820.10595286934537644No Hit
TCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT164320.10374315034460883No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT161580.10201325604115077No Hit
TTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT161240.10179859762393337No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT159800.10088945609218897No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT159690.10082000778073627No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)