FastQCFastQC Report
Wed 6 Sept 2023
SRR13762837_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762837_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16448385
Total Bases759.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT11314416.878736119077952No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT5325923.2379592282160226No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT4428262.6922156795332794No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT4149322.522630641245326No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT3422762.080909463147902No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT3231251.9644785795079576No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT3085441.8758315786017898No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2913771.7714626694353277No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT2900221.7632247786028838No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT2511491.5268915458873318No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2374421.4435581365586956No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2336471.4204859626036233No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT2212181.3449223130416754No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2081681.265583216832534No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1966351.1954669105811908No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1878611.1421242875820332No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1738701.0570642649719106No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1562680.9500507192651436No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1484900.9027634019996492No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1465250.8908169403865487No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1362030.8280630590784445No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1335680.8120432492308516No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1254390.7626219838604216No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1167770.7099602787750895No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1130330.6871981656557772No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1094420.6653662350437444No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT973380.5917784633567369No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT968520.5888237659806722No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT919150.5588086611542714No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT895880.5446613755696988No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT895510.5444364294731672No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT768420.46717048512665527No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT748770.4552240235135546No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT691480.42039385629653003No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT683680.4156517493966733No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT632580.3845848695783811No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT630410.38326559112034403No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT573960.3489461123386886No Hit
TCCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT566810.3445991810138199No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT550360.33459819915450667No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC544790.3312118484580705No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT505370.30724596974110224No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT497940.30272880893777715No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT486950.29604730190836365No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT471630.2867333175871066No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT449460.27325479066789843No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT448590.27272586335983745No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT446380.27138226640487806No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT441070.2681539859384371No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT434940.26442717628508816No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT421560.2562926390645647No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT400730.24362878179225497No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT388330.23609004774632888No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA378440.23007729938227978No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT377020.22921399274153662No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA376050.22862426919116985No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT375620.22836284534925466No Hit
TCTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT374290.22755425532658677No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT371720.22599179189932628No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT365290.2220825935190598No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT349710.21261053896780746No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT347270.2111271106555446No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT335950.20424497602652175No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT317120.19279704360032915No Hit
CTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT315060.19154464100882854No Hit
AGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT311320.18927086154658954No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT309750.1883163605423876No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT298210.18130047418029185No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT297820.18106336883529903No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT297240.18071075062992506No Hit
TCAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT296850.18047364528493223No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT263480.16018593922746824No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT261750.15913416423557694No Hit
ACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT260770.15853836106097954No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT260660.15847148519444312No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT258550.15718868448178955No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT253110.153881368900351No Hit
GCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT243130.14781390391822663No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT235400.14311435438798398No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT232690.14146677622149528No Hit
GACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT218890.13307689478328721No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT217230.13206767716101003No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT211880.12881507819764676No Hit
TCAGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT209630.127447162745765No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC209290.1272404555219251No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA206250.12539224975582708No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT206000.12524025915006246No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA202500.1231123906693575No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT200900.12213965079246382No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA199400.121227707157876No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT192780.11720299591722835No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT192670.1171361200506919No Hit
AGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT190230.11565269173842903No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT186140.11316612542811955No Hit
CCGCCACGCAGTTTTATCCGGTAACTGTAGGCACCATCAAT183380.11148814914047793No Hit
GCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT176890.1075424730148279No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT174400.10602864658141209No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT173900.10572466536988281No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT168390.10237479241883018No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT165040.10033811830158401No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)