FastQCFastQC Report
Wed 6 Sept 2023
SRR13762838_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762838_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15727211
Total Bases726.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT11021997.008229240391064No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT5153513.2768111269060993No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT4242322.697439488794294No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3975352.527689111565935No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT3309402.1042510334476976No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT3111541.9784436032555295No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2954611.8786611306988887No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2747461.7469467409065729No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT2740331.7424131971015075No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT2449361.5574026443722284No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2246441.4283778605119497No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2240741.424753568830481No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT2121791.3491203240040461No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1992461.2668870532734635No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1868991.1883798087276887No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1793671.1404882912806347No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1668361.060811099946456No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1526180.9704072769164221No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1433130.9112423048180635No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1408530.8956006249296204No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1333080.847626448198603No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1278640.8130112834373494No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1237530.7868718744855652No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1099530.699125865355275No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1086960.6911333484366682No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1075290.6837130880993458No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT926290.5889728318644673No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT913690.5809612397264842No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT873190.5552096935686818No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT862810.5486096676645338No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT846180.5380356377236879No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT738580.4696191842278965No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT719970.4577861898082247No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT663970.4221791136394113No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT658440.41866291486774104No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT604830.3845754978425609No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT599060.3809066973158814No Hit
TCCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT545060.3465713024388113No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT541420.34425684248783844No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT533180.3390175155658559No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC514070.3268666008232483No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT497180.31612725231447586No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT473130.30083528478126226No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT470020.29885782037260133No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT461090.2931797634049673No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT433270.2754906766368176No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT432940.2752808492236799No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT425360.2704611771279727No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT415820.26439525736635694No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT414920.2638230007850724No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT401240.255124700749548No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT380180.24173389674749068No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT365340.23229802156275514No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT364230.2315922384458376No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT362620.23056853500598423No Hit
TCTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT361300.22972922535343362No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA356280.22653730531115782No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA353560.2248078187543869No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT353080.22450261524436851No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT344510.21905346090924832No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT334500.21268869604407292No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT333270.21190661204965075No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT322690.20517941801632852No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT303270.19283139267350072No Hit
CTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT298360.18970941510227085No Hit
AGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT295370.18780825157111455No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT294410.18719784455107774No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT286910.18242903970704022No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT286650.1822637211391136No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT286390.18209840257118698No Hit
TCAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT281910.1792498364776819No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG260720.16577637319166127No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT254630.1619041036583028No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT253720.16132548867055957No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT249900.1588965774033298No Hit
ACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT249370.15855958186101782No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT242650.1542867327207602No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT240070.15264626385441132No Hit
GCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT232450.1478011581328692No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT222510.14148090211290484No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT220330.1400947695049046No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT210000.13352653563305025No Hit
GACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT207070.13166352254064626No Hit
TCAGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT199750.12700916901286566No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT198980.12651957171554448No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA198790.12639876199282887No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT197800.1257692797534159No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA195690.12442765599062669No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC195200.12411609407414959No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT191760.12192880225235105No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA188230.11968428477242404No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT186370.11850162117110274No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT184790.1174969929506255No Hit
CCGCCACGCAGTTTTATCCGGTAACTGTAGGCACCATCAAT182780.11621895325242347No Hit
AGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT182360.11595190018115736No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT178550.11352934732038632No Hit
GCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT168640.10722816651979807No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT167640.1065923258739264No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT167020.10619810467348598No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT162180.10312063594746709No Hit
TTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT160320.1019379723461458No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)