FastQCFastQC Report
Wed 6 Sept 2023
SRR13762839_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762839_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16020971
Total Bases742.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT10877186.789338798503536No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT5112933.1913983241090698No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT4073822.542804677694005No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3886632.4259640692190256No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT3287072.0517295736943786No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT3093681.931019037485306No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2940261.8352570515232818No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2653481.6562541683647014No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT2635201.644844123368053No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT2390161.4918945924064153No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2246001.4019125307698266No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2198401.3722014726822738No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT2128381.3284962565627265No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1912681.1938602223298451No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1798831.1227971138578305No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1792471.1188273170209222No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1623931.0136277008428516No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1428070.8913754353590678No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1427100.89076997892325No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1398830.873124356819571No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1273200.7947083856527797No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1252710.7819188986734948No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1142330.7130217013687873No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1123350.7011747290473218No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1088780.6795967610202902No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1009310.629993026015714No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT920890.5748028630724068No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT899860.5616763178711204No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT883280.5513273820918844No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT859000.536172245739662No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT814290.5082650733217107No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT729410.455284514278192No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT704290.43960506513618924No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT663300.4140198493586936No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT637100.3976662837726877No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT605320.377829783225998No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT569950.3557524696848899No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT550640.34369951733886794No Hit
TCCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT546510.3411216461224479No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC503930.3145439811357252No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT500360.3123156517791587No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT472860.2951506497327784No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT458930.28645579596892096No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT440720.2750894437047542No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT430260.26856050110820373No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT427940.2671123991173818No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT425070.26532099708563234No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT423580.2643909660656648No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT404980.25278118286338574No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT403090.25160147908638No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT402570.2512769045022302No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT378030.23595948085793303No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG365250.2279824362705606No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT362560.22630338697947833No Hit
TCTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT361520.22565423781117888No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT361360.22555436870836357No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT360780.2251923432106581No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA338190.21109207425692236No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT337970.21095475424055135No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT335430.2093693322333584No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA335080.20915086857094994No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT334390.2087201830650589No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT327750.20457561529822382No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT323070.20165444404087618No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT303770.18960773351378016No Hit
CTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT301600.1882532588068476No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT288320.17996412327317737No Hit
AGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT287230.17928376501024812No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT286790.17900912497750604No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT282720.17646870467464176No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT280060.1748083808403373No Hit
TCAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT278450.17380344799325834No Hit
ACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT249280.15559606218624328No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT246580.15391077107623502No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT243340.15188842174422512No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT242760.15152639624651965No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT237220.14806842856153976No Hit
GCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT236960.14790614126946486No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT232970.14541565551800822No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT222300.13875563472401267No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT222150.13866200744012333No Hit
GACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT210050.13110940653971598No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT209070.13049770828497226No Hit
TCAGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT200020.12484886215698163No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT194390.12133471810166813No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA190900.1191563232965093No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT189980.1185820759553213No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT189140.11805776316554095No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA187620.11710900668879558No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC186600.11647234115834801No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA182930.11418159361252199No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT182250.11375714992555694No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT179290.11190957152347383No Hit
CCGCCACGCAGTTTTATCCGGTAACTGTAGGCACCATCAAT178080.11115431143343309No Hit
AGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT177820.11099202414135823No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT173200.10810830379756632No Hit
GCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT166490.10392004329824953No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT166140.10370157963584105No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT161890.10104880659230955No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)