FastQCFastQC Report
Wed 6 Sept 2023
SRR13762840_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762840_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15515923
Total Bases719.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT10611276.8389550528189655No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT4977673.2081043454520883No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT3956852.5501866695265245No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3711452.3920265652259296No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT3204372.065213909607569No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT3000781.934000316964708No Hit
CGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2821161.8182353702064649No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC2587031.6673387719183708No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCAT2547961.642158188075566No Hit
CCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT2341701.5092237825619528No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT2168721.3977383105085015No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT2115101.3631802632689012No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT2038191.3136118296024026No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1861531.199754600483645No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT1741721.1225371510286561No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1726351.1126311982857868No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1567621.0103298398683727No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1415080.9120179315146124No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1390330.8960665762520218No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT1357580.8749592273692No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1241210.7999588551709106No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT1222000.7875780254903302No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT1145160.7380547067680086No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1092210.7039284739941026No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT1051990.6780067160683898No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT1006410.6486304424171221No Hit
GACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT876880.5651484607135522No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT869530.5604113915749647No Hit
TGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT849800.5476954223090692No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT832580.5365971460415213No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT785360.5061638936981061No Hit
GCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT698510.45018913795847015No Hit
TCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT685290.441668858501038No Hit
TCGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT634940.4092183236537072No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT611610.39418215725870775No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT575500.3709092910553887No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT552410.3560278044689961No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT527190.339773534581217No Hit
TCCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT525420.3386327709927408No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT495870.31958781955801147No Hit
TCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATC482850.31119643994108503No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT465880.3002592884741694No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG455210.29338248198318595No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT448080.2887872026691548No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT442370.2851071122227147No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAAT433030.27908748967109465No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT413470.2664810852696291No Hit
GCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT409550.2639546483957158No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAAT405380.2612670867211702No Hit
TCTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT394030.2539520207724671No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT390180.25147069884273077No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT389550.2510646643451376No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT365470.23554512354824136No Hit
CCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT352720.22732775871599775No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT352200.22699261913068275No Hit
TCTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT346850.22354454839715304No Hit
ACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT345720.22281626429829537No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT332620.21437332474516665No Hit
TAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA326830.21064167436252423No Hit
AAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCA325640.20987472031151483No Hit
CCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT324060.20885641157151916No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT323680.20861150187455815No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT322680.20796700267202922No Hit
GCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAAT307620.19826084468194385No Hit
GCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT290830.1874397030714834No Hit
CTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT288940.18622159957870377No Hit
AGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT280770.18095604109404256No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT276860.1784360492121545No Hit
TTGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCATCAAT276740.17835870930785103No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT275150.17733395557583007No Hit
TCAGGTTAGTTTTACCCTACTGATGATGCTGTAGGCACCATCAAT273710.17640587672418845No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT268370.17296425098268403No Hit
ACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT238790.15389996457187885No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT236630.15250784629441638No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT235750.15194068699619095No Hit
CCCCGCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT232970.15014897921316056No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAAT229080.1476418773153231No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT228400.14720361785760344No Hit
GCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT224580.144741630903943No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAAT214630.13832886383878032No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAAT211960.13660805096802814No Hit
TGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT200760.12938965989970433No Hit
GACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCATCAAT200110.12897073541806053No Hit
TCAGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT192570.12411121143099255No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAAT188490.12148165468467458No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACCATCAA183570.11831071860823232No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA182790.11780800923025979No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT182670.11773066932595631No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAAT182070.11734396980443898No Hit
TAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCTGTAGGCACC180670.1164416709208985No Hit
TCCCGCCACGCAGTTTTATCCGGTAAAGCTGTAGGCACCATCAAT178070.11476597299432331No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAAT173900.11207841131977775No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCA173660.11192373151117081No Hit
CCGCCACGCAGTTTTATCCGGTAACTGTAGGCACCATCAAT173310.11169815679028569No Hit
AGGTTAGTTTTACCCTACTGATGATGTGCTGTAGGCACCATCAAT173080.11154992197370404No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAAT166050.1070190925799258No Hit
AGGCCGAAGTGGAGAAGGGTTCCATGTGCTGTAGGCACCATCAAT164180.10581387907119674No Hit
GCCACGCAGTTTTATCCGGTAAACTGTAGGCACCATCAAT160570.10348723695006735No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGCTGTAGGCACCATCAAT158280.10201133377627615No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAAT155480.1002067360091952No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)