FastQCFastQC Report
Wed 27 Sept 2023
SRR13777338.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13777338.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2107
Total Bases58.5 kbp
Sequences flagged as poor quality0
Sequence length24-33
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGCACAATCGTTTTTATAAGGGTTTG1366.4546748932131No Hit
TGATGCACAATCGTTTTTATAAGGGTTTG954.508780256288562No Hit
ATGCACAATCGTTTTTATAAGGGTTTG904.271476032273375No Hit
GATGCACAATCGTTTTTATAAGGGTTTG843.9867109634551494No Hit
AGCTGATGCACAATCGTTTTTATAAGGG552.6103464641670624No Hit
AATCGTTTTTATAAGGGTTTGCGG482.2781205505457995No Hit
ATGCACAATCGTTTTTATAAGGGTTTGC472.230659705742762No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTG432.0408163265306123No Hit
TGCACAATCGTTTTTATAAGGGTTTG401.8984337921214998No Hit
AGCTGATGCACAATCGTTTTTATAAG391.8509729473184622No Hit
TGATGCACAATCGTTTTTATAAGGG351.6611295681063125No Hit
TTGATGCACAATCGTTTTTATAAGGGTTTGC321.5187470336971998No Hit
ACAATCGTTTTTATAAGGGTTTGCGG281.3289036544850499No Hit
TTGATGCACAATCGTTTTTATAAGGG271.2814428096820123No Hit
AGCTGATGCACAATCGTTTTTATAAGG261.2339819648789747No Hit
TGATGCACAATCGTTTTTATAAGGGTTTGC261.2339819648789747No Hit
AGCTGATGCACAATCGTTTTTATAA251.1865211200759374No Hit
TTGATGCACAATCGTTTTTATAAGGGTTT241.1390602752728998No Hit
GATGCACAATCGTTTTTATAAGGGTTTGC221.044138585666825No Hit
AGCTGATGCACAATCGTTTTTATAAGGGT221.044138585666825No Hit
TTGATGCACAATCGTTTTTATAAGG210.9966777408637874No Hit
TGCACAATCGTTTTTATAAGGGTTTGCGGT210.9966777408637874No Hit
AATCGTTTTTATAAGGGTTTGCGGT190.9017560512577124No Hit
ACAATCGTTTTTATAAGGGTTTGCGGT170.8068343616516375No Hit
AATCGTTTTTATAAGGGTTTGCGGTG160.7593735168485999No Hit
ACAATCGTTTTTATAAGGGTTTGCG150.7119126720455624No Hit
AAATCGTTTTTATAAGGGTTTGCGG150.7119126720455624No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAG140.6644518272425249No Hit
TGATGCACAATCGTTTTTATAAGGGTTT140.6644518272425249No Hit
TGCACAATCGTTTTTATAAGGGTTTGC140.6644518272425249No Hit
TGCACAATCGTTTTTATAAGGGTTTGCGG140.6644518272425249No Hit
GCACAATCGTTTTTATAAGGGTTTG130.6169909824394874No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGC130.6169909824394874No Hit
TGCACAATCGTTTTTATAAGGGTTTGCG130.6169909824394874No Hit
AGTCAGCTGATGCACAATCGTTTTTATAAG120.5695301376364499No Hit
TTGATGCACAATCGTTTTTATAAGGGT120.5695301376364499No Hit
AGTCAGCTGATGCACAATCGTTTTTATAAGGG120.5695301376364499No Hit
ACAATCGTTTTTATAAGGGTTTGC120.5695301376364499No Hit
AAATCGTTTTTATAAGGGTTTGCG110.5220692928334125No Hit
GCACAATCGTTTTTATAAGGGTTTGC110.5220692928334125No Hit
TGATGCACAATCGTTTTTATAAGGGTTTGCG110.5220692928334125No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTTTG110.5220692928334125No Hit
GATGCACAATCGTTTTTATAAGGG110.5220692928334125No Hit
TTTATAAGGGTTTGCGGTGTAAGTGC110.5220692928334125No Hit
TTGATGCACAATCGTTTTTATAAGGGTT110.5220692928334125No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGT110.5220692928334125No Hit
ATGCACAATCGTTTTTATAAGGGTTT110.5220692928334125No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCG100.47460844803037494No Hit
ATAAGGGTTTGCGGTGTAAGTGCAG100.47460844803037494No Hit
GCACAATCGTTTTTATAAGGGTTTGCGGT100.47460844803037494No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGC100.47460844803037494No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGC100.47460844803037494No Hit
TGATGCACAATCGTTTTTATAAGGGT100.47460844803037494No Hit
TCAGCTGATGCACAATCGTTTTTATAAGGG100.47460844803037494No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCGG90.42714760322733747No Hit
TTTATAAGGGTTTGCGGTGTAAGTG90.42714760322733747No Hit
CACAATCGTTTTTATAAGGGTTTGCGG90.42714760322733747No Hit
AAGGGTTTGCGGTGTAAGTGCAGC90.42714760322733747No Hit
CACAATCGTTTTTATAAGGGTTTG90.42714760322733747No Hit
AGTCAGCTGATGCACAATCGTTTTTATAA90.42714760322733747No Hit
TTATAAGGGTTTGCGGTGTAAGTGCAGC80.37968675842429994No Hit
TGATGCACAATCGTTTTTATAAGGGTTTGCGG80.37968675842429994No Hit
ATCGTTTTTATAAGGGTTTGCGGTG80.37968675842429994No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAG80.37968675842429994No Hit
AAATCGTTTTTATAAGGGTTTGCGGT70.33222591362126247No Hit
TGATGCACAATCGTTTTTATAAGG70.33222591362126247No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCA70.33222591362126247No Hit
TCAGCTGATGCACAATCGTTTTTATAAGG70.33222591362126247No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCA70.33222591362126247No Hit
CTGATGCACAATCGTTTTTATAAGGGTTTGCG70.33222591362126247No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTTTGC70.33222591362126247No Hit
TTTTATAAGGGTTTGCGGTGTAAGT70.33222591362126247No Hit
TCACAATCGTTTTTATAAGGGTTTGCGG60.28476506881822494No Hit
TTGCACAATCGTTTTTATAAGGGTTTGCGGT60.28476506881822494No Hit
CACAATCGTTTTTATAAGGGTTTGCGGTG60.28476506881822494No Hit
GCTGATGCACAATCGTTTTTATAA60.28476506881822494No Hit
TTTATAAGGGTTTGCGGTGTAAGT60.28476506881822494No Hit
TTGATGCACAATCGTTTTTATAAGGGTTTGCG60.28476506881822494No Hit
ATGCACAATCGTTTTTATAAGGGT60.28476506881822494No Hit
TTGATGCACAATCGTTTTTATAAGGGTTTGCGG60.28476506881822494No Hit
ATGCACAATCGTTTTTATAAGGGTT60.28476506881822494No Hit
TTTTTATAAGGGTTTGCGGTGTAAGT60.28476506881822494No Hit
TTATAAGGGTTTGCGGTGTAAGTGCAG60.28476506881822494No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGT60.28476506881822494No Hit
AGTCAGCTGATGCACAATCGTTTTTAT60.28476506881822494No Hit
TGCACAATCGTTTTTATAAGGGTTTGCGGTG60.28476506881822494No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTT60.28476506881822494No Hit
TATAAGGGTTTGCGGTGTAAGTGCAG60.28476506881822494No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAG50.23730422401518747No Hit
TTTTATAAGGGTTTGCGGTGTAAGTG50.23730422401518747No Hit
TGATGCACAATCGTTTTTATAAGGGTT50.23730422401518747No Hit
GCACAATCGTTTTTATAAGGGTTTGCGG50.23730422401518747No Hit
GCTGATGCACAATCGTTTTTATAAGGG50.23730422401518747No Hit
TCACAATCGTTTTTATAAGGGTTTGCGGT50.23730422401518747No Hit
CTGATGCACAATCGTTTTTATAAGGGT50.23730422401518747No Hit
GATGCACAATCGTTTTTATAAGGGTTTGCG50.23730422401518747No Hit
TTGCACAATCGTTTTTATAAGGGTTTGCGG50.23730422401518747No Hit
TATAAGGGTTTGCGGTGTAAGTGC50.23730422401518747No Hit
GCACAATCGTTTTTATAAGGGTTTGCGGTG50.23730422401518747No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGC50.23730422401518747No Hit
CACAATCGTTTTTATAAGGGTTTGCG50.23730422401518747No Hit
TTGCACAATCGTTTTTATAAGGGTTTG50.23730422401518747No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGT40.18984337921214997No Hit
TTCAGTCAGCTGATGCACAATCGTTTTTATAAG40.18984337921214997No Hit
CGTTTTTATAAGGGTTTGCGGTGTAAGTG40.18984337921214997No Hit
CTTCAGTCAGCTGATGCACAATCGTTTTTATAA40.18984337921214997No Hit
GTCAGCTGATGCACAATCGTTTTTATAAGGG40.18984337921214997No Hit
AGTCAGCTGATGCACAATCGTTTTTATAAGG40.18984337921214997No Hit
AGCTGATGCACAATCGTTTTTATA40.18984337921214997No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCGGT40.18984337921214997No Hit
AGTCAGCTGATGCACAATCGTTTTTATAAGGGT40.18984337921214997No Hit
GATGCACAATCGTTTTTATAAGGGTTT40.18984337921214997No Hit
GCTGATGCACAATCGTTTTTATAAG40.18984337921214997No Hit
ATCGTTTTTATAAGGGTTTGCGGTGTAAG40.18984337921214997No Hit
TCAGCTGATGCACAATCGTTTTTATAA40.18984337921214997No Hit
CAGTCAGCTGATGCACAATCGTTTTTATAAGG40.18984337921214997No Hit
GCTGATGCACAATCGTTTTTATAAGGGTTTGC40.18984337921214997No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC40.18984337921214997No Hit
CTGATGCACAATCGTTTTTATAAGGGTTTG40.18984337921214997No Hit
TAAGGGTTTGCGGTGTAAGTGCAGC40.18984337921214997No Hit
TCACAATCGTTTTTATAAGGGTTTGCGGTG40.18984337921214997No Hit
ATAAGGGTTTGCGGTGTAAGTGCA40.18984337921214997No Hit
TGCACAATCGTTTTTATAAGGGTTT30.14238253440911247No Hit
ATCGTTTTTATAAGGGTTTGCGGT30.14238253440911247No Hit
CAGCTGATGCACAATCGTTTTTATAAGG30.14238253440911247No Hit
CAATCGTTTTTATAAGGGTTTGCGGTG30.14238253440911247No Hit
TCAGCTGATGCACAATCGTTTTTATAAGGGT30.14238253440911247No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTG30.14238253440911247No Hit
TGCACAATCGTTTTTATAAGGGTT30.14238253440911247No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGCAG30.14238253440911247No Hit
TAGCTGATGCACAATCGTTTTTATAA30.14238253440911247No Hit
GCTGATGCACAATCGTTTTTATAAGGGT30.14238253440911247No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGC30.14238253440911247No Hit
TTGCACAATCGTTTTTATAAGGGTTTGCGGTG30.14238253440911247No Hit
TCGTTTTTATAAGGGTTTGCGGTGTAAG30.14238253440911247No Hit
CAGCTGATGCACAATCGTTTTTATAAGGG30.14238253440911247No Hit
TAGCTGATGCACAATCGTTTTTATAAGGG30.14238253440911247No Hit
CAGTCAGCTGATGCACAATCGTTTTTATAA30.14238253440911247No Hit
GCTGATGCACAATCGTTTTTATAAGG30.14238253440911247No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAG30.14238253440911247No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCGGTG30.14238253440911247No Hit
CAATCGTTTTTATAAGGGTTTGCGG30.14238253440911247No Hit
CTGATGCACAATCGTTTTTATAAGGGTTTGC30.14238253440911247No Hit
TTGCACAATCGTTTTTATAAGGGTTTGC30.14238253440911247No Hit
TCGTTTTTATAAGGGTTTGCGGTG30.14238253440911247No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGTAAG30.14238253440911247No Hit
CTGATGCACAATCGTTTTTATAAGGG30.14238253440911247No Hit
CAGTCAGCTGATGCACAATCGTTTTTATAAGGG30.14238253440911247No Hit
TTATAAGGGTTTGCGGTGTAAGTGC30.14238253440911247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)