FastQCFastQC Report
Wed 6 Sept 2023
SRR13777341.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13777341.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12799
Total Bases656.3 kbp
Sequences flagged as poor quality0
Sequence length34-98
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG6585.1410266427064615No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCA6174.820689116337213No Hit
AACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAA4583.578404562856473No Hit
ACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAG3052.382998671771232No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC2952.3048675677787327No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC2682.093913586998984No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC2441.9063989374169859No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG2361.8438940542229862No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG2351.8360809438237362No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG2281.7813891710289866No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC2271.7735760606297366No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC1811.4141729822642395No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC1701.3282287678724902No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC1641.2813501054769905No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG1531.1954058910852412No Hit
ACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGG1531.1954058910852412No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG1491.1641534494882413No Hit
CAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATA1441.1250878974919916No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC1270.9922650207047425No Hit
CCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT1260.9844519103054927No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT1070.8360028127197436No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC1020.796937260723494No Hit
CTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGG1000.7813110399249942No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG990.7734979295257443No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT960.7500585983279944No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCAC950.7422454879287445No Hit
TCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT910.7109930463317446No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG890.6953668255332448No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC840.6563012735369951No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG830.6484881631377452No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG830.6484881631377452No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT800.6250488319399953No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC770.6016095007422455No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG670.523478396749746No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCA620.48441284475349633No Hit
GCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTT600.4687866239549965No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTA600.4687866239549965No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG560.4375341823579967No Hit
ATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTA530.4140948511602469No Hit
CGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTT530.4140948511602469No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC510.398468630361747No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG510.398468630361747No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC490.3828424095632471No Hit
CCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGT470.36721618876474726No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC460.35940307836549734No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC450.35158996796624736No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG450.35158996796624736No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC420.32815063676849754No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC420.32815063676849754No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAG410.3203375263692476No Hit
AACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCG400.31252441596999764No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG400.31252441596999764No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC400.31252441596999764No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC400.31252441596999764No Hit
CCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTG400.31252441596999764No Hit
TTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACA380.29689819517149774No Hit
AACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT380.29689819517149774No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC360.2812719743729979No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC350.27345886397374797No Hit
ATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG320.25001953277599814No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC310.24220642237674816No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC280.21876709117899834No Hit
ACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT270.2109539807797484No Hit
GCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC260.2031408703804985No Hit
ACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT260.2031408703804985No Hit
TTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGT250.19532775998124854No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG240.1875146495819986No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG230.17970153918274867No Hit
TGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTT230.17970153918274867No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG230.17970153918274867No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC230.17970153918274867No Hit
TCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC230.17970153918274867No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC230.17970153918274867No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC220.17188842878349872No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT210.16407531838424877No Hit
ATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTA210.16407531838424877No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC210.16407531838424877No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT200.15626220798499882No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG200.15626220798499882No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC200.15626220798499882No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG190.14844909758574887No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT190.14844909758574887No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC190.14844909758574887No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC190.14844909758574887No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC190.14844909758574887No Hit
TGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC190.14844909758574887No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC190.14844909758574887No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG190.14844909758574887No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGACA190.14844909758574887No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC180.14063598718649895No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC180.14063598718649895No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG180.14063598718649895No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGACACAGGCA180.14063598718649895No Hit
TGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC170.132822876787249No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCG170.132822876787249No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGTCCGTCTTACACCGTGCGGCACAGG170.132822876787249No Hit
TGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTT160.12500976638799907No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG160.12500976638799907No Hit
GAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGC160.12500976638799907No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT160.12500976638799907No Hit
TGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAA160.12500976638799907No Hit
CATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGT160.12500976638799907No Hit
TCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCC160.12500976638799907No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG160.12500976638799907No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC160.12500976638799907No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT150.11719665598874912No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG150.11719665598874912No Hit
AAGGGTTTGTGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCA150.11719665598874912No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGTGGCACAGGCA150.11719665598874912No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC150.11719665598874912No Hit
CCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT150.11719665598874912No Hit
AGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATC150.11719665598874912No Hit
GTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG140.10938354558949917No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGG140.10938354558949917No Hit
AAGGGTTTGCGGTGTAAGTGCAGTCCGTCTTACACCGTGCGGCACAGGCA140.10938354558949917No Hit
TGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACA140.10938354558949917No Hit
TAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATA140.10938354558949917No Hit
TCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC130.10157043519024925No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG130.10157043519024925No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGTGGCACAGG130.10157043519024925No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG130.10157043519024925No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC130.10157043519024925No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCA130.10157043519024925No Hit
ATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGAT130.10157043519024925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)