FastQCFastQC Report
Wed 27 Sept 2023
SRR13777342.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13777342.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1927
Total Bases96.3 kbp
Sequences flagged as poor quality0
Sequence length34-94
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCA874.514789828749351No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG773.995848469122989No Hit
AACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAA653.3731188375713548No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG583.009859885832901No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC512.6466009340944474No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC482.4909185262065385No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC472.4390243902439024No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC442.2833419823559935No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG422.179553710430721No Hit
ACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAG392.0238713025428128No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG321.660612350804359No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC311.6087182148417227No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC301.5568240788790866No Hit
ACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGG301.5568240788790866No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC251.2973533990659056No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC251.2973533990659056No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG251.2973533990659056No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCAC231.1935651271406331No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG211.0897768552153606No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC201.0378827192527245No Hit
CCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT190.9859885832900882No Hit
CAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATA190.9859885832900882No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT190.9859885832900882No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG180.9340944473274521No Hit
TCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT140.7265179034769071No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC140.7265179034769071No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG130.6746237675142709No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG120.6227296315516346No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT120.6227296315516346No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG120.6227296315516346No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG110.5708354955889984No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTA100.5189413596263622No Hit
ATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTA100.5189413596263622No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC100.5189413596263622No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT100.5189413596263622No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG100.5189413596263622No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG90.46704722366372603No Hit
CCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGT90.46704722366372603No Hit
GCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTT90.46704722366372603No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAG80.4151530877010898No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCA80.4151530877010898No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG80.4151530877010898No Hit
CTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGG80.4151530877010898No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC80.4151530877010898No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG70.3632589517384536No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC70.3632589517384536No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC70.3632589517384536No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGC70.3632589517384536No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC70.3632589517384536No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC70.3632589517384536No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC70.3632589517384536No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC70.3632589517384536No Hit
ATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG60.3113648157758173No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG60.3113648157758173No Hit
TGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC60.3113648157758173No Hit
CGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTT60.3113648157758173No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC50.2594706798131811No Hit
AACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCG50.2594706798131811No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC50.2594706798131811No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC50.2594706798131811No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT50.2594706798131811No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG50.2594706798131811No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC50.2594706798131811No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC50.2594706798131811No Hit
TTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGT50.2594706798131811No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC50.2594706798131811No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGTGGCACAGG40.2075765438505449No Hit
ACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT40.2075765438505449No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG40.2075765438505449No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT40.2075765438505449No Hit
AGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATC40.2075765438505449No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG40.2075765438505449No Hit
CCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTG40.2075765438505449No Hit
AACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT40.2075765438505449No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC40.2075765438505449No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC40.2075765438505449No Hit
CAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC30.15568240788790866No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT30.15568240788790866No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGACACAGGCA30.15568240788790866No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGTGGC30.15568240788790866No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC30.15568240788790866No Hit
GCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA30.15568240788790866No Hit
CATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGT30.15568240788790866No Hit
CTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGT30.15568240788790866No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGC30.15568240788790866No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC30.15568240788790866No Hit
TCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCC30.15568240788790866No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC30.15568240788790866No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG30.15568240788790866No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC30.15568240788790866No Hit
TTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC30.15568240788790866No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC30.15568240788790866No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGAC30.15568240788790866No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGACA30.15568240788790866No Hit
AAGGGTTTGCGGCGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCA20.10378827192527244No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG20.10378827192527244No Hit
ACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
CATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAG20.10378827192527244No Hit
TCAGTCAGCTGATGCACAATCGTTTTTATAAGGG20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGTAGCCCGTCTTACACCGTGCGGCACAGGC20.10378827192527244No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG20.10378827192527244No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGTGGCACAGGC20.10378827192527244No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG20.10378827192527244No Hit
TGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTT20.10378827192527244No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
CGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCG20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGTAGCCCGTCTTACACC20.10378827192527244No Hit
AAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCA20.10378827192527244No Hit
TAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCAGCACAGGC20.10378827192527244No Hit
TTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT20.10378827192527244No Hit
GTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCG20.10378827192527244No Hit
CCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG20.10378827192527244No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGTCCGTCTTACACCGTGCGG20.10378827192527244No Hit
ATAAGGGTTTGCGGTGTAAGTGTAGCCCGTCTTACACCGTGCGGCACAGG20.10378827192527244No Hit
TTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC20.10378827192527244No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGT20.10378827192527244No Hit
TTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTG20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCA20.10378827192527244No Hit
CGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGT20.10378827192527244No Hit
TTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCG20.10378827192527244No Hit
CCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
TGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTT20.10378827192527244No Hit
ATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGTCCGTCTTACACCGTGCGGCACAGG20.10378827192527244No Hit
AGCTGATGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC20.10378827192527244No Hit
AAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGACACAGGC20.10378827192527244No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTG20.10378827192527244No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACAC20.10378827192527244No Hit
AAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC20.10378827192527244No Hit
TTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGG20.10378827192527244No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGACACAGGCAC20.10378827192527244No Hit
ATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGAT20.10378827192527244No Hit
TTGCACAATCGTTTTTATAAGGGTTTGCGGTGTAAGTGC20.10378827192527244No Hit
GCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGG20.10378827192527244No Hit
ATAAGGGTTTGCGGTGTAAGTGCAACCCGTCTTACACC20.10378827192527244No Hit
TGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATG20.10378827192527244No Hit
ATAAGGGTTTGCGGTGTAAGTGCAGCTCGTCTTACACCGTGCGGCACAGG20.10378827192527244No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCG20.10378827192527244No Hit
CGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
TTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTT20.10378827192527244No Hit
ACTCCGCGAACCCATGCTTCAGTCAGCTGATACACAATCGTTTTTATAAG20.10378827192527244No Hit
TCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGC20.10378827192527244No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGG20.10378827192527244No Hit
TTATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACA20.10378827192527244No Hit
AATCGTTTTTATAAGGGTTTGCGGTGTAAGTGCAGCC20.10378827192527244No Hit
CGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGGTTTG20.10378827192527244No Hit
TCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTATAAGGT20.10378827192527244No Hit
ATAAGGGTTTGCGATGTAAGTGCAGCCCGTCTTACACCGTGCGG20.10378827192527244No Hit
ACAATCGTTTTTATAAGGGTTTGCGGTGTAAGACGGG20.10378827192527244No Hit
AAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTC20.10378827192527244No Hit
TATAAGGGTTTGCGGTGTAAGTGCAGCCCGTCTTAC20.10378827192527244No Hit
TAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit
AGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACC20.10378827192527244No Hit
ACCCATGCTTCAGTCAGCTGATGCACAATCGTTTTTAT20.10378827192527244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)