FastQCFastQC Report
Fri 1 Sept 2023
SRR13808027_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808027_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6651077
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG1056811.5889306348430488No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA961621.4458109566315351No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC663210.99714677788274No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC603560.9074620546416768No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG544590.8187997222104029No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC376350.5658482077413929No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT322890.4854702479012046No Hit
CCCGGAGCAGATTACGCTCCGGGACGATCAGCGACACTAGTTAGCGTGCG210610.3166554830142547No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG205650.30919804416638086No Hit
CCCCTGTCGGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT190530.2864648838075397No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA184060.2767371359555753No Hit
CCCGGAGCTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG158520.23833733995261216No Hit
CCCGGCTGCCGGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTCTT149280.2244448530666537No Hit
CCCGGAGCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA147560.22185880572424588No Hit
CCCGGAGCCCAGATTACGCTCCGGGACGATCAGCGACACTAGTTAGCGTG146840.2207762742785868No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG133850.20124560277982048No Hit
CCCGGAGCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAG126300.18989405775936738No Hit
CCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC126200.18974370616969252No Hit
CCCGGAGCGTACCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGG126020.18947307330827776No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA124700.18748843232456938No Hit
CCCGGAGCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA116780.17558058642231927No Hit
CCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC116730.17550541062748184No Hit
CCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG107340.16138739635701105No Hit
CCCGGAGCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACG106260.1597635991885224No Hit
CCCGGAGCCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG102020.15338869178630768No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG101280.1522760900227136No Hit
CCCGGAGCCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC100350.15087782023873728No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGACG98770.14850226512187426No Hit
CCCGGAGCGTACCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGT94240.1416913381096024No Hit
CCCGGAGCCTCCGGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTC94170.14158609199682998No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA92680.13934585331067434No Hit
CCCGGAGCCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC88900.13366256322096406No Hit
CCCTGTCTGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA88210.13262513725220743No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC85580.1286708904437582No Hit
CCCGGAGCGATTACGCTCCGGGACGATCAGCGACACTAGTTAGCGTGCGG80390.12086764293963217No Hit
CCCGGAGCACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGG79560.11961972474533071No Hit
CCGGAGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC76970.11572561857275145No Hit
CCGCACGCACACTAGTTAGCGTGCGGACGATCAGCGACACTAGTTAGCGT75490.1135004150455633No Hit
CCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC73180.11002729332407368No Hit
CCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG71700.10780208979688553No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)