FastQCFastQC Report
Fri 1 Sept 2023
SRR13808049_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808049_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4422813
Total Bases698.8 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG852461.9274158776326287No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA779801.7631312922341504No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC534621.208778214227009No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC490261.108480055566446No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG441910.9991604890371807No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC308190.6968189701893343No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT261170.5905065396163031No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG233490.5279219356549779No Hit
CCCTGTCTGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA221940.5018073339297863No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA218620.4943007990615927No Hit
CCTGTCTCGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC195290.441551564581184No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG179080.4049006819867808No Hit
CCCCTGTCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT177300.4008760940152794No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA167860.3795322117394518No Hit
CCCGGAGCAGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGCGTGCG157210.35545251404479455No Hit
CCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC145610.32922486209568436No Hit
CCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC138220.31251603900051844No Hit
CCCGGAGCTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG128120.2896798937689656No Hit
CCCGGCTGCCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTT123520.27927927316845635No Hit
CCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG122020.275887766450899No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG121020.27362676197252744No Hit
CCCGGAGCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA118030.26686635858219643No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC114900.2597894145648934No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA111240.2515141381740535No Hit
CCCGGAGCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAG108640.24563552653028742No Hit
CCCGGAGCCCAGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGCGTG107530.24312581155929497No Hit
CCGGAGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC103760.23460182467583413No Hit
CCCGGAGCGTACCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGG102140.23093899742087218No Hit
CCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG95170.21517979620662236No Hit
CCCGGAGCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA94780.21429800446005742No Hit
CCCGGAGCCTCCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTC90630.20491483587481543No Hit
CCCGGAGCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACG86240.19498902621476422No Hit
CCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC83810.1894947853323213No Hit
CCCGGAGCCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG82360.18621632883868253No Hit
CCCGGAGCGTACCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGT81940.18526670695776648No Hit
CCCGGAGCCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC81400.18404576453944582No Hit
TCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC75260.1701631970422444No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGATT74950.1694622856539492No Hit
CCCGGAGCCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC73550.166296879384229No Hit
CCCCGGAGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT72650.16426197535369458No Hit
TCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC68030.15381613466361793No Hit
CCGGAGCGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC62640.14162932052519517No Hit
TCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG62380.14104145936081858No Hit
CCCGGAGCACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGG62190.14061186850992796No Hit
CCGGCTGTCCGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTA61740.13959441649466076No Hit
CCGGAGCGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT54720.12372216505649233No Hit
CCCGGAGCGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGCGTGCGG49640.11223626230636476No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGATTA49200.11124142033588126No Hit
CCCCCTGTGGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTA46240.10454884707990142No Hit
CCCCGGCTCCGGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCT46210.10448101694555026No Hit
CCCCGGAGAGATTACGCTCCGGGGATTAGCCGCGACACTAGTTAGCGTGC45430.10271743345242045No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGATTAG45090.1019486919297741No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGC44770.1012251704966952No Hit
TCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC44690.10104429013842549No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)