FastQCFastQC Report
Fri 1 Sept 2023
SRR13808060_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808060_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3366200
Total Bases531.8 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG96160.2856633592775236No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA89620.26623492365278356No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC61220.18186679341690928No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC54840.16291367120194877No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG52280.1553086566454756No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG48220.14324757887231893No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA44520.1322559562711663No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG38620.11472877428554452No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA36430.10822292198918664No Hit
CCTGTCTCGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC35160.10445012179906125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)