FastQCFastQC Report
Fri 1 Sept 2023
SRR13808068_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808068_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18498592
Total Bases490.6 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTTAGGAT1761080.9520075906317627No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT1059060.5725084373989112No Hit
TAGTGGGCCGGCGGGGCTTGTGCGAAAGCTC888190.4801392451922827No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC794500.4294921472942373No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT440650.23820731869755277No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT427810.23126624988539668No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT389850.21074576919151466No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC343280.18557088020536913No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA341700.1847167611459294No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT275760.14907080495639885No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT235580.12735023292583567No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCT233640.12630150446044758No Hit
GCGTCTGTAGTCCAACGGTTAGGAT220250.11906311572253715No Hit
GGGGACGTAGCTCATATGGT214600.11600882921251521No Hit
GTGGTCGTGCCGGAGTGGTT211810.11450060631641587No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGC202760.10960834208354885No Hit
GCCCGTCTAGCTCAGTCGGTAGAGC189560.10247266386544446No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATAC189000.10216993812285821No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC186950.10106174567231928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)