FastQCFastQC Report
Fri 1 Sept 2023
SRR13808072_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808072_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28905931
Total Bases777.9 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGGGCCGGCGGGGCTTGTGCGAAAGCTC4912621.699519728321499No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC1498240.5183157740188337No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT733910.25389599110300237No Hit
TAGTGGGCCGGCGGGGCTTGTGCGAAAGCTC695340.2405527087157303No Hit
AGTGGGCCGGCGGGGCTTGTGCGAAAGCTC667030.2307588709043829No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT620780.2147586943316235No Hit
GTCAGGATAGCTCAGTTGGTAGAGC610470.21119195226751217No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG464770.16078707169127332No Hit
AGCACATGACGAAGTGAGCGGGCTCT459300.15889472648364103No Hit
GTGAAACCGTGCTGAGCTCCCAAGC409150.1415453458323138No Hit
GAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCT383570.13269595087596384No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT354050.12248351385049662No Hit
TTGTCGTCTAGTCCGGTTAGGATACCTGG342790.11858811951083671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)