FastQCFastQC Report
Fri 1 Sept 2023
SRR13808076_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808076_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21800663
Total Bases565.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGGGCCGGCGGGGCTTGTGCGAAAGCTC2308141.0587476169876118No Hit
GTGAAACCGTGCTGAGCTCCCAAGC1863330.8547125378709812No Hit
CGTGAAACCGTGCTGAGCTCCCAAGC1068430.49009059953818834No Hit
AACCGTGCTGAGCTCCCAAGC1038940.47656348800034204No Hit
AGTGGGCCGGCGGGGCTTGTGCGAAAGCTC1008560.46262813199763697No Hit
TGAAACCGTGCTGAGCTCCCAAGC755670.34662707276379623No Hit
TAGTGGGCCGGCGGGGCTTGTGCGAAAGCTC693910.3182976591124775No Hit
GAAACCGTGCTGAGCTCCCAAGC608790.27925297501273244No Hit
AAACCGTGCTGAGCTCCCAAGC440370.20199844380879606No Hit
ACCGTGCTGAGCTCCCAAGC434600.19935173531190312No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC362310.16619219332916618No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT342310.157018160410993No Hit
GACGACTTGGCTCTTGTATCGATG284840.1306565768206224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)