FastQCFastQC Report
Fri 1 Sept 2023
SRR13808081_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808081_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12498652
Total Bases332.5 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCTGTAGTTTAGTGGTAAGAATTCC2182151.74590827874878No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATTCCACG575000.46004961175013115No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATTC568270.45466503107695133No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATT416120.3329319033764601No Hit
GGTGGCTGTAGTTTAGTGGTTAGAATTCC353470.28280649785272843No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT323600.25890792063016077No Hit
GGGAGACCATCGACTACGCCTTTCGGCCTGA290140.23213703365770966No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATTCCACGT283350.22670444780765156No Hit
GGGAGACCATCGACTACGCCTTTCGGCCTGATC278260.22263200863581128No Hit
TGGTCAACGACAACGGACAGAACGTGT251170.2009576712752703No Hit
AGCACTTTGGCGGGTAGAACCTCGCTCT241090.1928928015597202No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATTCCA237650.19014050475203245No Hit
GGTGGCTGTAGTTTAGTGGTAAGA233100.18650011217209664No Hit
AAGCTCTTCCTCGTCTGCGCAACTC201040.16084934599347192No Hit
AACGACGGACAGGAACCACTTGTCA199710.15978523123933686No Hit
GCATTTATTAGACTGATGATTCATGATAACTC198690.15896914323240618No Hit
ATTTATTAGACTGATGATTCATGATAACT194820.15587280932375747No Hit
TTCGATCTAGCCAGTCACCAGAACC180230.1441995504795237No Hit
AACGGCCTTGAGGAGACTATCTGCA173690.13896698619979178No Hit
GGTCAACGACAACGGACAGAACGTGT171200.13697477135934338No Hit
GGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTT169100.1352945901686038No Hit
TATCAAATGGTTTCCAGATCTCTCCCG165230.13219825625995507No Hit
GGTGGCTGTAGTTTAGTGGTTAGAATCCC158680.1269576911174101No Hit
TACAACGACGGACAGGAACCACTTGTCA150970.12078902588855181No Hit
GGTGGCTGTAGTTTAGTGGTTAGAATCCCACGT132050.10565139344626924No Hit
ATCAAATGGTTTCCAGATCTCTCCCG131220.10498732183278645No Hit
TGAACGCTAACGAGATCTTGTACTGCA129360.10349916134955994No Hit
AACGACGGACAGGAACCACTTGTC129010.10321913115110333No Hit
CTTCGATCTAGCCAGTCACCAGAACC125210.10017880328214596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)