FastQCFastQC Report
Fri 1 Sept 2023
SRR13808090_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808090_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21068381
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC468600.22241860919450812No Hit
CCCCTGTCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT340440.16158811633414072No Hit
CCCTGTCTGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA332810.15796657559971028No Hit
GCTGTCTCCATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC238400.11315534876647616No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)