FastQCFastQC Report
Fri 1 Sept 2023
SRR13808093_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808093_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22227494
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC773570.3480239382811216No Hit
CCCCCTGTGGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA665760.2995209446463015No Hit
TCCCCTGTGGGATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA493970.22223377948049383No Hit
CCCGGCTGCCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTT475290.21382977316291257No Hit
CCCCTGTCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTAT473810.21316393112062026No Hit
TCTGTCTCATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC302810.13623218163954964No Hit
GCTGTCTCCTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC273760.12316278209320404No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)