FastQCFastQC Report
Fri 1 Sept 2023
SRR13808094_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808094_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1424451
Total Bases225 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC95190.6682574549773913No Hit
CCCTGTCTGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA54470.38239293594514656No Hit
TCCCCTGTGGGATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA45940.32251021621663367No Hit
CCCCTGTCGGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTAT45790.32145717894122017No Hit
TCTGTCTCATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC43840.30776769436084495No Hit
GCTGTCTCCTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC41930.29435901972058004No Hit
CCCGGCTGCCGGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTT40580.28488168424185883No Hit
TCCCGGCTCCGGGATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCT40300.28291601466108696No Hit
CCCCCTGTGGGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA26670.18723002756851587No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG23590.16560766218002584No Hit
GCCCCTGTGGGCTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA21850.15339242978522954No Hit
TCCTGTCTGATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA21730.15254999996489876No Hit
CCCCGGCTCCGGGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCT21290.1494610906236859No Hit
GCCTGTCTGCTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA19410.1362630234385037No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG17930.12587305565442405No Hit
TCCCTGTCGGATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTAT17840.12524123328917597No Hit
CCCGGAGCCCAGATTACGCTCCGGGTCGAGAGTCGACACTAGTTAGCGTG16390.11506187296017904No Hit
TCCCGGAGCCAGATTACGCTCCGGGATCGAGAGTCGACACTAGTTAGCGT16380.11499167047515146No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG15440.10839263688256037No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA14790.10382947535576864No Hit
ACCTGTCTGTTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA14410.10116178092472118No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)