FastQCFastQC Report
Fri 1 Sept 2023
SRR13808095_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808095_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2035653
Total Bases321.6 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGCTGTCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA1337626.5709627328429745No Hit
GGCTGTCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA431452.1194673158932296No Hit
CGGAGCTGCTCCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTT333111.6363790881844795No Hit
GGAGCGTAAGATTACGCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCT220761.084467735905874No Hit
CCCGGCTGCCGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTT212041.0416313585861636No Hit
GGAGCGTAGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG204221.0032161669989925No Hit
GGAGCGTAAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA199980.9823874697701426No Hit
GGAGCGTAACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC165560.8133016776434884No Hit
CGGCTGTCCCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT154310.7580368559867522No Hit
CCCGGAGCCTCCGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTC135490.6655849498907722No Hit
GGAGCGTACCAGATTACGCTCCAGGATAGCCGACACTAGTTAGCGTGCGG131690.6469177212422745No Hit
GTCTCTTAGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACACA130940.6432333997984921No Hit
GGAGCGTAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC129550.6364051240560155No Hit
CGGAGCGTGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG115400.5668942594833206No Hit
CGGAGCGTAGATTACGCTCCGAGGATAGCCGACACTAGTTAGCGTGCGGC114660.5632590623254553No Hit
GGAGCGTAATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG111080.5456725679671339No Hit
GGAGCGTAGATTACGCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTG107310.5271527121763877No Hit
CCTGTCTCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC93900.46127704476155806No Hit
GGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC92940.45656111331351656No Hit
GGAGCGTAGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCA90010.4421676975398066No Hit
GGAGCGTAGTACCAGATTACGCTCCAGGATAGCCGACACTAGTTAGCGTG83890.4121036345585421No Hit
GGAGCGTAAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCAGGATA82870.40709295739499807No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG78200.38415191587171293No Hit
CGGAGCGTAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA74140.36420745578937075No Hit
CCCCTGTCGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT73280.35998276720050026No Hit
GGAGCGTACCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT72020.35379310717494583No Hit
CTGTCTCTAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA67530.33173630279816846No Hit
CGGAGCGTACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC63130.31012161699464497No Hit
GGAGCGTAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCAGGATAG54020.2653693925241679No Hit
GGAGCGCTCGCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCT53970.2651237710945824No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA50700.2490601295996911No Hit
GGAGCGTAACGTACCAGATTACGCTCCAGGATAGCCGACACTAGTTAGCG49850.24488456529673772No Hit
CGGAGCGTGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC49020.24080724956561853No Hit
CCCGGAGCCCAGATTACGCTCCGGGAGGATAGCCGACACTAGTTAGCGTG48420.23785979241059255No Hit
CCCGGAGCAGATTACGCTCCGGGAGGATAGCCGACACTAGTTAGCGTGCG46360.22774018951167022No Hit
GGAGCGTAATTACGCTCCGGGCGACGTACCAGATTACGCTCCAGGATAGC45400.22302425806362872No Hit
CGGAGCGTCCAGATTACGCTCCGAGGATAGCCGACACTAGTTAGCGTGCG43400.21319940088020897No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC43080.2116274237308618No Hit
CCCTGTCTGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA42170.2071571137124058No Hit
CGGAGCGTATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG41560.20416053227146277No Hit
CGGAGCGTGATTACGCTCCGAGGATAGCCGACACTAGTTAGCGTGCGGCT39240.19276369793869583No Hit
TGGAGCTGCTCCAAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTT37160.18254584646793928No Hit
CGGAGCGTCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC35170.1727701135704366No Hit
GGAGCGTATACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG35060.17222974642534852No Hit
CCCCGGCTCCGGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCT34710.17051039641825005No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC33800.16604008639979406No Hit
CGGACTGTTCCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA33710.16559796782654018No Hit
CGGAGCGTGTACCAGATTACGCTCCGAGGATAGCCGACACTAGTTAGCGT33670.16540147068287178No Hit
CGGAGCGTAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGAGGAT32970.16196277066867487No Hit
CCCCCTGTGGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA31580.15513449492619813No Hit
GGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCAGGA29660.14570263203011513No Hit
GGAGCGTAGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA28810.14152706772716175No Hit
CGGAGCGTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT27690.13602514770444668No Hit
GGAGCGTACGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC27590.1355339048452757No Hit
GGAGCCTGGCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCTT27360.13440404626918243No Hit
GGAGCGTCACGCTCCAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTC27170.13347068483675753No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG26740.1313583405423223No Hit
GGAGCGTACCGGGCGACGTACCAGATTACGCTCCAGGATAGCCGACACTA24990.12276159050682998No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC24410.11991238192363826No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGAGG24090.11834040477429111No Hit
GGAGCGTAGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA22600.11102088617264338No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGAGGATAGCCGACACTAGTTAGC22320.10964540616696461No Hit
CCCCGGAGCTCCGGGGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCT22160.10885941759229102No Hit
GGAGCGTACTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG21840.10728744044294386No Hit
CGGAGCCTGCTCCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTCT21000.10316100042590756No Hit
CGGAGCGTGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGAGGATA20910.10271888185265368No Hit
CGGAGCGCCGCTCCGAGGATAGCCGACACTAGTTAGCGTGCGGCTGTCTC20590.1011469047033065No Hit
GGAGCGTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC20570.1010486561314723No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)