FastQCFastQC Report
Fri 1 Sept 2023
SRR13808096_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808096_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2218956
Total Bases350.5 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT232421.0474295118965855No Hit
GTCTCTTACGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACACA117150.5279509823538637No Hit
CCCTGTCTGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA94370.4252900913763049No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG94110.42411836917901935No Hit
CCCCTGTCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT93530.4215045273543053No Hit
CCTGTCTCGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC79170.3567894090734562No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTG73390.3307411233030308No Hit
TCCCGGCTCCGGGAATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT72850.32830754643174537No Hit
CCCCGGCTCCGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT66880.3014030021325344No Hit
CTGTCTCTATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA66800.30104247222567726No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA60810.27404779544975205No Hit
CCCGGAGCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCG57370.2585450094548968No Hit
CCGGCTGTCCGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA56210.2533173258054689No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC53560.24137477264082752No Hit
CCCGGAGCCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTC52110.23484016807904257No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC39620.17855243637097806No Hit
CCCCCTGTGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA34390.15498279371019524No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG33190.14957484510733876No Hit
TCCCCTGTGGGAATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA32380.14592447980041065No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG31600.14240931320855393No Hit
GCCCGGCTCCGGGCATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT31580.14231918073183966No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC29270.13190887967134093No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGATC28890.1301963626137697No Hit
CCTGGCTGCCAGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT26270.11838900816419974No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGC26040.11735248468198557No Hit
CCCCGGAGCCAGATTACGCTCCGGGGATCGTCTCCGACACTAGTTAGCGT24080.10851950196398667No Hit
CTCGGCTGCCGAGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT23210.10459873922691572No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT22360.10076810896655905No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)