FastQCFastQC Report
Fri 1 Sept 2023
SRR13808097_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808097_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3928661
Total Bases620.7 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGTCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT187990.4785090899927482No Hit
CCCTGTCTGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA129860.3305451908423761No Hit
CCCGGCTGCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTT128150.32619256280956793No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG101620.25866319338828164No Hit
CCCGGAGCCCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTG78780.20052633709042342No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA66080.16819980140816426No Hit
TCCCGGCTCCGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCT58490.1488802418941212No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC56910.1448585154076669No Hit
TCCCCTGTGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA56830.14465488368683377No Hit
GCCTGTCTGCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA49720.12655711449778945No Hit
CCCGGAGCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCG47930.1220008547441482No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC46900.11937909633842167No Hit
CCTGTCTCGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC46720.11892092496654713No Hit
CCCCCTGTGGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA46350.1179791282576939No Hit
ACCTGTCTGTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA43840.11159018301655449No Hit
CCCCGGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCT43120.10975749752905634No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC43000.10945204994780663No Hit
CCCGGAGCCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTC42920.10924841822697352No Hit
TCCCTGTCGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT40940.10420853313635359No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)