FastQCFastQC Report
Fri 1 Sept 2023
SRR13808098_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808098_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2034479
Total Bases321.4 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTT167800.8247811847652396No Hit
CCCCCTGTGGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA135490.6659690269597278No Hit
TCCCCTGTGGGATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA132440.6509774738397398No Hit
CCCCTGTCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTAT110640.543824733506711No Hit
CCTGTCTCGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC96200.4728483311943745No Hit
TCCCGGCTCCGGGATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCT52520.2581496294628748No Hit
CCCCGGCTCCGGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCT50320.2473360501632113No Hit
GCCCCTGTGGGCTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA43960.21607497546054788No Hit
CCCTGTCTGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA37190.18279864279749264No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG36060.17724439524812002No Hit
CCCGGAGCCCAGATTACGCTCCGGGTGTTCCGTCGACACTAGTTAGCGTG35080.17242743719645176No Hit
CCCGGAGCAGATTACGCTCCGGGTGTTCCGTCGACACTAGTTAGCGTGCG28790.14151043092605037No Hit
TCTGTCTCATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC26990.13266295695359842No Hit
CCCCGGAGCCAGATTACGCTCCGGGGTGTTCCGTCGACACTAGTTAGCGT24400.11993242495990375No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA24120.11855615123085567No Hit
GCTGTCTCCTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC21500.1056781613376201No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG21210.10425273497539174No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)